View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6599_high_11 (Length: 274)
Name: NF6599_high_11
Description: NF6599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6599_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 2 - 256
Target Start/End: Complemental strand, 8756199 - 8755947
Alignment:
| Q |
2 |
aaatgtctcaaatgatggcctgtactatcgtgacaacgattccgaaatgcttatgccgagtgataaattcaggtatcaaattatgaacctttcaagtgtc |
101 |
Q |
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| T |
8756199 |
aaatgtctcaaatgatggcctgtactatcgtgacaacgattccgaaatgcttatgccgagtgataaattcaggtatcaaattacgaacctttcaagtgtc |
8756100 |
T |
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| Q |
102 |
caatagtgtattttcgtagtgaatcacttgtcggacaattttgtcattaaaattaacaatagtctaaaatgatcccaaaaattaaaagtactagatctta |
201 |
Q |
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| T |
8756099 |
caatagtgtattttcgtagtgaatcacttgtcggacaattttgtcattaaaattaacaatagtctaaa--gatcccaaaaattaaaagtactagatctta |
8756002 |
T |
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| Q |
202 |
ttagtccttttatgttcttcaatttagtgatgaaattgttcatgtgggactatat |
256 |
Q |
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| T |
8756001 |
ttagtccttttatgttcttcaatttagtgatgaaattgttcatgtgggactatat |
8755947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 2 - 127
Target Start/End: Complemental strand, 8748648 - 8748523
Alignment:
| Q |
2 |
aaatgtctcaaatgatggcctgtactatcgtgacaacgattccgaaatgcttatgccgagtgataaattcaggtatcaaattatgaacctttcaagtgtc |
101 |
Q |
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| T |
8748648 |
aaatgtcttgaatgatggcatgtactattgtgacaaggattcggaaatgcttatgccaagtgataaattcaggtatcaaattatgaacctttctagtgtt |
8748549 |
T |
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| Q |
102 |
caatagtgtattttcgtagtgaatca |
127 |
Q |
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| T |
8748548 |
caatggtgtattttcgaagtgaatca |
8748523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 96
Target Start/End: Complemental strand, 8766208 - 8766123
Alignment:
| Q |
12 |
aatgatggcctgtactatcgtgacaacgattccgaaatgcttatgccgagtgataaattcaggtatcaaa-ttatgaacctttcaa |
96 |
Q |
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||||||||| |||||| | |||||| ||||| | || ||||||||| | |||||||||||||||||||| ||||||||| ||||| |
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| T |
8766208 |
aatgatggcatgtacttttctgacaaggattctgcaaagcttatgccaactgataaattcaggtatcaaatttatgaaccattcaa |
8766123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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