View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6599_high_17 (Length: 251)
Name: NF6599_high_17
Description: NF6599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6599_high_17 |
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Alignment Details
Target: chr7 (Bit Score: 129; Significance: 7e-67; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 16 - 148
Target Start/End: Original strand, 47367045 - 47367177
Alignment:
| Q |
16 |
atcaacacaagcaaaagtaagatcaacaagcacaccaaaaacaagaataggaaggaattgggacatgagctctgattgctattcaccaagcaaaagaatg |
115 |
Q |
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| T |
47367045 |
atcaacacaagcaaaagtaagatcaacaagcacaccaaaaacaagaataggaaggaattgggacatgagctctgattgctattcaccaagcaaaagaatg |
47367144 |
T |
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| Q |
116 |
ataaataataatcaacaacaaggatctcctagc |
148 |
Q |
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| T |
47367145 |
atcaataataatcaacaacaaggatctcctagc |
47367177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 80
Target Start/End: Original strand, 39455476 - 39455522
Alignment:
| Q |
34 |
aagatcaacaagcacaccaaaaacaagaataggaaggaattgggaca |
80 |
Q |
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|||||||||| |||||| ||||| ||| ||||||||||||||||||| |
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| T |
39455476 |
aagatcaacaggcacacaaaaaataaggataggaaggaattgggaca |
39455522 |
T |
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