View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6599_high_18 (Length: 250)
Name: NF6599_high_18
Description: NF6599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6599_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 31714007 - 31713773
Alignment:
| Q |
1 |
cttgctgcgaaggggcgtcttattcattatcattctcgtttagatgctcttctgcttcaagaacttgataagagcaagatgaataacaaaagaagagtta |
100 |
Q |
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| T |
31714007 |
cttgctgcgaaggggcgtcttattcattatcattctcgtttagatgctcttctgcttcaagaacttgataagagcaagatgaataacaaaagaagagtta |
31713908 |
T |
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| Q |
101 |
agaatgtgaagcaattacgagggtcatgtttgaactctgttgcttgtgattcagttcattcagatttgtggcagcagtggcattatgattatggtatatt |
200 |
Q |
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| T |
31713907 |
agaatgtgaagcaattacaagggtcatgtttgaactctgttgcttgtgattcagttcattcagatttgtggcagcagtggcattatgattatggtatatt |
31713808 |
T |
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| Q |
201 |
tgctgttctaacggctccgtgttttcttttaccat |
235 |
Q |
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| T |
31713807 |
tactgttctaacggctccgtgttttcttttaccat |
31713773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 32 - 186
Target Start/End: Original strand, 33728838 - 33728992
Alignment:
| Q |
32 |
attctcgtttagatgctcttctgcttcaagaacttgataagagcaagatgaataacaaaagaagagttaagaatgtgaagcaattacgagggtcatgttt |
131 |
Q |
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|||||| ||||||||| |||| || ||||||||||||||| | | ||| ||||| |||||||| |||||||||| |||| |||| |||||||||||| |
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| T |
33728838 |
attctcatttagatgcgattctactacaagaacttgataagggtacgataaataagaaaagaagggttaagaatgcaaagccattagaagggtcatgttt |
33728937 |
T |
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| Q |
132 |
gaactctgttgcttgtgattcagttcattcagatttgtggcagcagtggcattat |
186 |
Q |
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| T |
33728938 |
gaattatgttgcttgtgatgcagttcattcggatttgtggcaggagtggtattat |
33728992 |
T |
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