View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6599_high_20 (Length: 240)
Name: NF6599_high_20
Description: NF6599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6599_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 4179990 - 4179775
Alignment:
| Q |
1 |
tggatgtgttaatttcttcttttgaggttgtaggtaacatgttgtgtatttgtacccatttattaaggaatttttggttgaccaaaacctctgccaagag |
100 |
Q |
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| T |
4179990 |
tggatgtgttaatttcttcttttgaggttgtaggtaacatgttgtgtatttgtacccatttattaaggaatttttggtttaccaaaacctctgccaagag |
4179891 |
T |
|
| Q |
101 |
gaggctacaactaatgccgattgagtatcctccacatttgaagtttgtcacctgaagnnnnnnnccacatctacaaattaaattgtatatctgatcaaac |
200 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
4179890 |
gaggctacaacaaatgccgattgagtatcctccacatttgaagtttgtcacctgaagaaaaaaaccacatctacaaattaaattgtatatctgatcaaac |
4179791 |
T |
|
| Q |
201 |
tcaaattcattaacag |
216 |
Q |
| |
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|||||||||||||||| |
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| T |
4179790 |
tcaaattcattaacag |
4179775 |
T |
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