View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6599_high_22 (Length: 214)
Name: NF6599_high_22
Description: NF6599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6599_high_22 |
 | |
|
| [»] chr1 (3 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 117; Significance: 9e-60; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 62 - 214
Target Start/End: Original strand, 40968453 - 40968605
Alignment:
| Q |
62 |
atttagttatccatatacacnnnnnnnngtcatgcagtttcttagcatggaggacaatcttgatgccctacatcttctcacttttcacaatttattattt |
161 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40968453 |
atttagttatccatatacacttttttttgtcatgcagtttcttagcatggaggacaatcttgatgccctacatcttctcacttttcacaatttattattt |
40968552 |
T |
|
| Q |
162 |
ttatccattgaaatatctgagaattgcagtcggaatatgctcgtcagctttat |
214 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
40968553 |
ttatcgattgaaatatctgagaattgcagttggaatatgctcgttagctttat |
40968605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 94 - 212
Target Start/End: Original strand, 14267462 - 14267580
Alignment:
| Q |
94 |
tgcagtttcttagcatggaggacaatcttgatgccctacatcttctcacttttcacaatttattatttttatccattgaaatatctgagaattgcagtcg |
193 |
Q |
| |
|
|||||||||| |||||||||||||| ||||| | ||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||| | | |
|
|
| T |
14267462 |
tgcagtttctgagcatggaggacaaacttgacaacacacatcttctcacttttcacaatttactatttttatcgattgaaatatctaagaattgcaattg |
14267561 |
T |
|
| Q |
194 |
gaatatgctcgtcagcttt |
212 |
Q |
| |
|
||||||||| || |||||| |
|
|
| T |
14267562 |
gaatatgcttgttagcttt |
14267580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 165
Target Start/End: Original strand, 40981937 - 40982009
Alignment:
| Q |
93 |
atgcagtttcttagcatggaggacaatcttgatgccctacatcttctcacttttcacaatttattatttttat |
165 |
Q |
| |
|
||||||||||| |||||||| || ||| |||| |||||||||| |||||||||||||||||| || ||||| |
|
|
| T |
40981937 |
atgcagtttctaagcatggaagataatattgacaacctacatcttgtcacttttcacaatttatcatctttat |
40982009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 6e-33; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 93 - 212
Target Start/End: Complemental strand, 20439894 - 20439775
Alignment:
| Q |
93 |
atgcagtttcttagcatggaggacaatcttgatgccctacatcttctcacttttcacaatttattatttttatccattgaaatatctgagaattgcagtc |
192 |
Q |
| |
|
||||||||||| |||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||| |
|
|
| T |
20439894 |
atgcagtttctcagcatggaggacaaacttgacaacttacatcttctcacttttcacaatttattatttttatgggttgaaatatctaagaattggagtt |
20439795 |
T |
|
| Q |
193 |
ggaatatgctcgtcagcttt |
212 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
20439794 |
ggaatatgctcgtcagcttt |
20439775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 93 - 212
Target Start/End: Complemental strand, 20443498 - 20443379
Alignment:
| Q |
93 |
atgcagtttcttagcatggaggacaatcttgatgccctacatcttctcacttttcacaatttattatttttatccattgaaatatctgagaattgcagtc |
192 |
Q |
| |
|
||||||||||| |||||||||||||| ||||| | |||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||| | |
|
|
| T |
20443498 |
atgcagtttctcagcatggaggacaaacttgacaacttacatcttctcacttttcacaatttattatatttaacggttgaaatatctgagaattgcaatt |
20443399 |
T |
|
| Q |
193 |
ggaatatgctcgtcagcttt |
212 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
20443398 |
ggaatatgctcgtcagcttt |
20443379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 93 - 212
Target Start/End: Complemental strand, 20450370 - 20450251
Alignment:
| Q |
93 |
atgcagtttcttagcatggaggacaatcttgatgccctacatcttctcacttttcacaatttattatttttatccattgaaatatctgagaattgcagtc |
192 |
Q |
| |
|
||||||||||| ||||||||| ||| ||||| | ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
20450370 |
atgcagtttctcggcatggaggccaaacttgacaacttacatcttctcacttttcacaatttattatttttatcggttgaaatatatgagaattgcagtt |
20450271 |
T |
|
| Q |
193 |
ggaatatgctcgtcagcttt |
212 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
20450270 |
ggaatatgctcgtcagcttt |
20450251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 93 - 212
Target Start/End: Complemental strand, 20462001 - 20461882
Alignment:
| Q |
93 |
atgcagtttcttagcatggaggacaatcttgatgccctacatcttctcacttttcacaatttattatttttatccattgaaatatctgagaattgcagtc |
192 |
Q |
| |
|
||||||||||| |||||||||||||| ||||| | ||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
20462001 |
atgcagtttctcagcatggaggacaaacttgacaacttacatcttctcacttttcacagtttattatttttatcggttgaaatatctgagagatgcagtt |
20461902 |
T |
|
| Q |
193 |
ggaatatgctcgtcagcttt |
212 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
20461901 |
ggaatatgctcgtcagcttt |
20461882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 93 - 212
Target Start/End: Complemental strand, 20278630 - 20278511
Alignment:
| Q |
93 |
atgcagtttcttagcatggaggacaatcttgatgccctacatcttctcacttttcacaatttattatttttatccattgaaatatctgagaattgcagtc |
192 |
Q |
| |
|
||||||||||| |||||||||||||| || | | ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
20278630 |
atgcagtttctcagcatggaggacaaattttacaacttacatcttctcacttttcacaatttattattgttatgggttgaaatatctgagaattgcagtt |
20278531 |
T |
|
| Q |
193 |
ggaatatgctcgtcagcttt |
212 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
20278530 |
ggaatatgctcgtcagcttt |
20278511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 93 - 212
Target Start/End: Complemental strand, 20431197 - 20431078
Alignment:
| Q |
93 |
atgcagtttcttagcatggaggacaatcttgatgccctacatcttctcacttttcacaatttattatttttatccattgaaatatctgagaattgcagtc |
192 |
Q |
| |
|
||||||||||| |||||||||||||| ||||| | | ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
20431197 |
atgcagtttctcagcatggaggacaaacttgacagcttgcatcttctcacttttcacaatttattatttttaacagttgaaatatctgagaattgcagtt |
20431098 |
T |
|
| Q |
193 |
ggaatatgctcgtcagcttt |
212 |
Q |
| |
|
||||||||||| ||| |||| |
|
|
| T |
20431097 |
ggaatatgctcatcaacttt |
20431078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 93 - 212
Target Start/End: Complemental strand, 20476208 - 20476089
Alignment:
| Q |
93 |
atgcagtttcttagcatggaggacaatcttgatgccctacatcttctcacttttcacaatttattatttttatccattgaaatatctgagaattgcagtc |
192 |
Q |
| |
|
||||||||||| ||||| |||||||| ||||| | ||||||||||||||||||||| ||| |||| |||||| ||||||||||||||| ||||||| |
|
|
| T |
20476208 |
atgcagtttctcagcatcgaggacaaacttgacaacttacatcttctcacttttcacagtttgttatatttatcagttgaaatatctgagagttgcagtt |
20476109 |
T |
|
| Q |
193 |
ggaatatgctcgtcagcttt |
212 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
20476108 |
ggaatatgctcgtcagcttt |
20476089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 94 - 212
Target Start/End: Original strand, 45484422 - 45484540
Alignment:
| Q |
94 |
tgcagtttcttagcatggaggacaatcttgatgccctacatcttctcacttttcacaatttattatttttatccattgaaatatctgagaattgcagtcg |
193 |
Q |
| |
|
|||||||||| |||||||||||||| ||||| | ||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||||| | | |
|
|
| T |
45484422 |
tgcagtttctgagcatggaggacaaacttgacaacacacatcttctcacttttcacaatttacaatttttatcgattgaaatatctaagaattgcaattg |
45484521 |
T |
|
| Q |
194 |
gaatatgctcgtcagcttt |
212 |
Q |
| |
|
||||||||| || |||||| |
|
|
| T |
45484522 |
gaatatgcttgttagcttt |
45484540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University