View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6599_high_23 (Length: 213)
Name: NF6599_high_23
Description: NF6599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6599_high_23 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 171; Significance: 5e-92; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 9 - 199
Target Start/End: Complemental strand, 29160065 - 29159875
Alignment:
| Q |
9 |
ggtaaaacttaagttcaaaagagaatgaaaaccaagtaagaaaatttgacaaattcacgtaaagttaccagggaaataaagatataatcaagtaaattag |
108 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29160065 |
ggtaaaacttaagttcaaaagtgaatgaaaaccaagtaagaatatttgacaaagtcacataaagttaccagggaaataaagatataatcaagtaaattag |
29159966 |
T |
|
| Q |
109 |
tagaaagtaatttgacataaaaggaaaattgatgaaattagcagttcaacaagagtgatataaagaaataatataaactgatgataaggaa |
199 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29159965 |
tagaaagtaatttgacatgaaaggaaaattgatgaaattagcagttcaacaagagtgatataaagaaataatataaactgatgataaggaa |
29159875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 29150293 - 29150250
Alignment:
| Q |
5 |
cactggtaaaacttaagttcaaaagagaatgaaaaccaagtaag |
48 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
29150293 |
cactggtaaaacttaagttcaaaagtgaatgagaaccaagtaag |
29150250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University