View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6599_high_3 (Length: 419)
Name: NF6599_high_3
Description: NF6599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6599_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 166; Significance: 1e-88; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 34964877 - 34965097
Alignment:
| Q |
1 |
ctaccatactttgtatgtccaacgaaaattttggtgtgcttcgatcaaatatttgttagtagttgagaagacaacatagttgaaatggagggtctattta |
100 |
Q |
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| T |
34964877 |
ctaccatactttgtatgtccaacgaaatttttggtgtgcttcgatcaaatatt-gttagtagttgagaagtcaacatagttgaaatggagggtctattta |
34964975 |
T |
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| Q |
101 |
ctttgtgaaaaccttttcaannnnnnnnnnnnagaatatatatatcttactaataagaatacgtgagacttttaaaatgaacaattatgatggaaagaag |
200 |
Q |
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| T |
34964976 |
ctttgtgaaaaccttttcaatttttattttttagaatatatatatcttactaataagaatacgtgagacttttaaaatgaacaattatgatggaaagaag |
34965075 |
T |
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| Q |
201 |
attaaatgatagttagagatac |
222 |
Q |
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| T |
34965076 |
attaaatgaaagttagagatac |
34965097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 306 - 334
Target Start/End: Original strand, 34965181 - 34965209
Alignment:
| Q |
306 |
caagagtctaatatctcattgttagcaag |
334 |
Q |
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| T |
34965181 |
caagagtctaatatctcattgttagcaag |
34965209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 150 - 220
Target Start/End: Complemental strand, 39681998 - 39681928
Alignment:
| Q |
150 |
ctaataagaatacgtgagacttttaaaatgaacaattatgatggaaagaagattaaatgatagttagagat |
220 |
Q |
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| T |
39681998 |
ctaataagaagatgcgagactcttaaaatgaaccattgtgatggagagaagatgaaatgctagttatagat |
39681928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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