View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6599_high_6 (Length: 404)

Name: NF6599_high_6
Description: NF6599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6599_high_6
NF6599_high_6
[»] chr1 (1 HSPs)
chr1 (1-390)||(26642230-26642612)


Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 390
Target Start/End: Original strand, 26642230 - 26642612
Alignment:
Q  1 caatatcaaatataagtgtccctaaagttgaaccttcaccatttgcaagtcgagtcggattaaaaatggtagtgaacagcctctgcctgtcaaagaactt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26642230 caatatcaaatataagtgtccctaaagttgaaccttcaccatttgcaagtcgagtcggattaaaaatggtagtgaacagcctctgcctgtcaaagaactt 26642329  T
Q  101 ttttattttatttgaaagaagacattaaaaattagtactatagtcgtcaatcaaacgtatataattagctccaactagagaatatatatatgtgcgcgcg 200  Q
    |||| |||||    |||||| ||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |  |||||||||    
T  26642330 tttt-tttta----aaagaatacaataaaaattagtactgtagtggtcaatcaaacgtatataattagctccaactagagaatatatgt--gtgcgcgcg 26642422  T
Q  201 catgtgtttgtgatgaaaaaacctatcaatttaggtaatgtatactgtatatatgcataaaatcaaacgttactagataattctggatcataaaaggatt 300  Q
    | |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  26642423 cgtgtgtttgtgatgaaaaaacctatcaatttagataatgtatattgtatatatgcataaaatcaaacgttactaggtaattctggatcataaaaggatt 26642522  T
Q  301 cttacattaggcgggataggttcctgtgatgtgttctgatacccaagtgatggaggtatgacgactctacgaataccaccgactttcatt 390  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26642523 cttacattaggtgggataggttcctgtgatgtgttctgatacccaagtgatggaggtatgacgactctacgaataccaccgactttcatt 26642612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University