View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6599_high_7 (Length: 398)
Name: NF6599_high_7
Description: NF6599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6599_high_7 |
 | |
|
| [»] chr1 (3 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 374; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 13 - 398
Target Start/End: Complemental strand, 8756586 - 8756201
Alignment:
| Q |
13 |
aatatcacaacttgctttcttatactcttctctatgcctaatctccattggagctggtggtgtaagagcctcttccttagcctttggcattgaccaacta |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8756586 |
aatatcacaacttgctttcttatactcttctctatgcctaatctccattggagctggtggtgtaagagcctcttccttagcctttggcattgaccaacta |
8756487 |
T |
|
| Q |
113 |
gacaaggaaaaagatgcaggaatcatagagggctactttaattggagctatgctttaacagcagctgcagttttaattggaacgaccatcttggcataca |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
8756486 |
gacaaggaaaaagatgcaggaatcatagagggctactttaattggagctatgctttaacagcagctgcagttttaattggaacgaccatcttggcgtaca |
8756387 |
T |
|
| Q |
213 |
ttcaagaaaattttggttggattattggatttggtgtccctgttgtcttcatgttcatatctatggtgtctttcttcttagcttcttcactctatgttaa |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
8756386 |
ttcaagaaaattttggttggattattggatttggtgtccctgttgtcttcatgttcatatctatggtgtctttgttcttagcttcttcactctatgttaa |
8756287 |
T |
|
| Q |
313 |
ggttgaaccgaaaggcaatgtgattagtgagtgtgctcgagtcgtcgccgcgtcttacagaaacagaaaccacaacttaccatcat |
398 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8756286 |
ggttgaaccgaaaggcaatgtgattagtgagtgtgctcgagtcgtcgtcgcgtcttacagaaacagaaaccacaacttaccatcat |
8756201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 16 - 398
Target Start/End: Complemental strand, 8749032 - 8748650
Alignment:
| Q |
16 |
atcacaacttgctttcttatactcttctctatgcctaatctccattggagctggtggtgtaagagcctcttccttagcctttggcattgaccaactagac |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
8749032 |
atcacaacttgctttcttatactcttctctatgcctaatcgccattggagctggtggtgtaagagcttcttccttaccctttggcattgaccaactagac |
8748933 |
T |
|
| Q |
116 |
aaggaaaaagatgcaggaatcatagagggctactttaattggagctatgctttaacagcagctgcagttttaattggaacgaccatcttggcatacattc |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
8748932 |
aaggaaaaagatgcaggaatcatagagggctactttaattggacctatgctttagcaacagctgcagttttaattggaacgaccattttggcatatattc |
8748833 |
T |
|
| Q |
216 |
aagaaaattttggttggattattggatttggtgtccctgttgtcttcatgttcatatctatggtgtctttcttcttagcttcttcactctatgttaaggt |
315 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| | |||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||| ||||| |
|
|
| T |
8748832 |
aagaaaattttggttggattgttggatttggtttacctgttgtgttcatgttcatatctatggtatctttctttctagcttcttcactctatgtcaaggt |
8748733 |
T |
|
| Q |
316 |
tgaaccgaaaggcaatgtgattagtgagtgtgctcgagtcgtcgccgcgtcttacagaaacagaaaccacaacttaccatcat |
398 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||| || | ||||||||| |||||||||||| | | |||||||||| |
|
|
| T |
8748732 |
ggaaccaaaaggcaacgtgattagtgagtgtgctcgagtggttgtcgcgtcttatcgaaacagaaacctcgagttaccatcat |
8748650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 16 - 397
Target Start/End: Complemental strand, 8766602 - 8766221
Alignment:
| Q |
16 |
atcacaacttgctttcttatactcttctctatgcctaatctccattggagctggtggtgtaagagcctcttccttagcctttggcattgaccaactagac |
115 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || || ||||||||||||||||| |||||| || |
|
|
| T |
8766602 |
atcacagcttgctttcttatactcttctctatgcttaatctccattggagctggtggtgtaagagcttcctctttagcctttggcattgatcaactaaac |
8766503 |
T |
|
| Q |
116 |
aaggaaaaagatgcaggaatcatagagggctactttaattggagctatgctttaacagcagctgcagttttaattggaacgaccatcttggcatacattc |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||| |||| | |||||||| |||| |
|
|
| T |
8766502 |
aaggaaaaagatgcaggaatcatagagggctactttaattggacctatgctttaacagcagctgcagtcctaactggaatgaccgttttggcatatattc |
8766403 |
T |
|
| Q |
216 |
aagaaaattttggttggattattggatttggtgtccctgttgtcttcatgttcatatctatggtgtctttcttcttagcttcttcactctatgttaaggt |
315 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
8766402 |
aagaaatttttggttggatggttggatttggtgtacctgttgtgttcatgttcatatctatggtgtctttctttttaggttcttcactctatgttaaggt |
8766303 |
T |
|
| Q |
316 |
tgaaccgaaaggcaatgtgattagtgagtgtgctcgagtcgtcgccgcgtcttacagaaacagaaaccacaacttaccatca |
397 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||| ||| | ||||||| |
|
|
| T |
8766302 |
ggaaccaaaaggcaatgtgattagtgagtttgctcgagttgtcatcgcgtcttacagaaacagaaacctcaaatcaccatca |
8766221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University