View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6599_low_21 (Length: 230)

Name: NF6599_low_21
Description: NF6599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6599_low_21
NF6599_low_21
[»] chr4 (2 HSPs)
chr4 (14-212)||(16842471-16842669)
chr4 (26-85)||(24217462-24217521)
[»] chr5 (12 HSPs)
chr5 (25-212)||(37400407-37400594)
chr5 (27-212)||(37533480-37533665)
chr5 (25-212)||(37640250-37640437)
chr5 (32-212)||(37594709-37594889)
chr5 (32-212)||(37703053-37703233)
chr5 (26-212)||(37712003-37712189)
chr5 (26-212)||(37824274-37824460)
chr5 (32-212)||(37697172-37697352)
chr5 (25-212)||(37436085-37436272)
chr5 (39-212)||(37392487-37392660)
chr5 (38-85)||(37343272-37343319)
chr5 (34-79)||(37429119-37429164)
[»] chr3 (1 HSPs)
chr3 (21-212)||(14553484-14553675)


Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 14 - 212
Target Start/End: Complemental strand, 16842669 - 16842471
Alignment:
Q  14 gtagcaaagggacaactttaacaacgaaggcaaagaataacaccaatttggaattgttccatttaacatgttctcactcaaacccacatagctcaatttt 113  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16842669 gtagcgaagggacaactttaacaacgaaggcaaagaataacaccaatttggaattgttccatttaacatgttctcactcaaacccacatagctcaatttt 16842570  T
Q  114 gaagtttttgtgatttcaattggaattgggccaaccagtttgttaaatgataaatataaatcagaaagataaggtagatgaaaaagtgatgatggaact 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  16842569 gaagtttttgtgatttcaattggaattgggccaaccagtttgttaaatgataaatataaattagaaagataaggtagatgaaaaagtgatgatggaact 16842471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 26 - 85
Target Start/End: Complemental strand, 24217521 - 24217462
Alignment:
Q  26 caactttaacaacgaaggcaaagaataacaccaatttggaattgttccatttaacatgtt 85  Q
    ||||| ||||||||||||||| ||||||||||| |  |||||||||||||||||||||||    
T  24217521 caactctaacaacgaaggcaaggaataacaccattgcggaattgttccatttaacatgtt 24217462  T

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Target: chr5 (Bit Score: 140; Significance: 2e-73; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 25 - 212
Target Start/End: Complemental strand, 37400594 - 37400407
Alignment:
Q  25 acaactttaacaacgaaggcaaagaataacaccaatttggaattgttccatttaacatgttctcactcaaacccacatagctcaattttgaagtttttgt 124  Q
    |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||  |||||||||||||||||||  ||||||    
T  37400594 acaactctaacaacgaaggcaaagaataacaccaatgtggaattgttccatttaacatgttatcacccaaaaacacatagctcaattttgaacgttttgt 37400495  T
Q  125 gatttcaattggaattgggccaaccagtttgttaaatgataaatataaatcagaaagataaggtagatgaaaaagtgatgatggaact 212  Q
    |||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  37400494 gatttcaattggaattgggccaactagtttgttagatgataaatataaatgagaaagatgaggtagatgaaaaagtgatgatggaact 37400407  T

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Target: chr5; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 27 - 212
Target Start/End: Original strand, 37533480 - 37533665
Alignment:
Q  27 aactttaacaacgaaggcaaagaataacaccaatttggaattgttccatttaacatgttctcactcaaacccacatagctcaattttgaagtttttgtga 126  Q
    |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||    
T  37533480 aactctaacaacgaaggcaaagaataacaccaatgtggaattgttccatttaacatgttatcactcaaacccacatagctcaattttgaacgttttgtga 37533579  T
Q  127 tttcaattggaattgggccaaccagtttgttaaatgataaatataaatcagaaagataaggtagatgaaaaagtgatgatggaact 212  Q
    |||||||||||||||| ||||| ||||||||| ||||||||  ||||  |||||| | ||||||||||||||||||||||||||||    
T  37533580 tttcaattggaattggcccaactagtttgttatatgataaacctaaaatagaaaggtgaggtagatgaaaaagtgatgatggaact 37533665  T

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Target: chr5; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 25 - 212
Target Start/End: Original strand, 37640250 - 37640437
Alignment:
Q  25 acaactttaacaacgaaggcaaagaataacaccaatttggaattgttccatttaacatgttctcactcaaacccacatagctcaattttgaagtttttgt 124  Q
    |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||  |||||||||||| |||||||| |||  |||||     
T  37640250 acaactctaacaacgaaggcaaagaataacaccaatgtggaattgttccatttaacatgttatcatccaaacccacatatctcaatttggaacgttttgc 37640349  T
Q  125 gatttcaattggaattgggccaaccagtttgttaaatgataaatataaatcagaaagataaggtagatgaaaaagtgatgatggaact 212  Q
    |||||||||||||||||||||||| ||||||||| ||| ||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  37640350 gatttcaattggaattgggccaactagtttgttatatgctaaatataaatgagaaagatgaggtagatgaaaaagtgatgatggaact 37640437  T

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Target: chr5; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 32 - 212
Target Start/End: Original strand, 37594709 - 37594889
Alignment:
Q  32 taacaacgaaggcaaagaataacaccaatttggaattgttccatttaacatgttctcactcaaacccacatagctcaattttgaagtttttgtgatttca 131  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||  |||||||||||||    
T  37594709 taacaacgaaggcaaagaataacaccaatgtggaattgttccatttaacatgttatccctcaaacccacatagctcaattttgaacgttttgtgatttca 37594808  T
Q  132 attggaattgggccaaccagtttgttaaatgataaatataaatcagaaagataaggtagatgaaaaagtgatgatggaact 212  Q
    ||||||||||| ||||| ||||||||| ||||||||  ||||  |||||| | ||||||||||||||||||||||||||||    
T  37594809 attggaattggcccaactagtttgttatatgataaacctaaaatagaaaggtgaggtagatgaaaaagtgatgatggaact 37594889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 32 - 212
Target Start/End: Original strand, 37703053 - 37703233
Alignment:
Q  32 taacaacgaaggcaaagaataacaccaatttggaattgttccatttaacatgttctcactcaaacccacatagctcaattttgaagtttttgtgatttca 131  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||  |||||||||||||    
T  37703053 taacaacgaaggcaaagaataacaccaatgtggaattgttccatttaacatgttatccctcaaacccacatagctcaattttgaacgttttgtgatttca 37703152  T
Q  132 attggaattgggccaaccagtttgttaaatgataaatataaatcagaaagataaggtagatgaaaaagtgatgatggaact 212  Q
    ||||||||||| ||||| ||||||||||||||||||  ||||  | |||| | ||||||||||||||||||||||||||||    
T  37703153 attggaattggcccaactagtttgttaaatgataaacctaaaataaaaaggtgaggtagatgaaaaagtgatgatggaact 37703233  T

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Target: chr5; HSP #6
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 26 - 212
Target Start/End: Original strand, 37712003 - 37712189
Alignment:
Q  26 caactttaacaacgaaggcaaagaataacaccaatttggaattgttccatttaacatgttctcactcaaacccacatagctcaattttgaagtttttgtg 125  Q
    ||||| |||||| |||||||||||||||||||| | |||||||||||||||||||||||| |||  ||||  |||||||||||||||||||  |||||||    
T  37712003 caactctaacaatgaaggcaaagaataacaccactgtggaattgttccatttaacatgttatcatccaaaaacacatagctcaattttgaacgttttgtg 37712102  T
Q  126 atttcaattggaattgggccaaccagtttgttaaatgataaatataaatcagaaagataaggtagatgaaaaagtgatgatggaact 212  Q
    ||||||||||||||||||||||| |||||||||  || ||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  37712103 atttcaattggaattgggccaactagtttgttatctgctaaatataaatgagaaagatgaggtagatgaaaaagtgatgatggaact 37712189  T

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Target: chr5; HSP #7
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 26 - 212
Target Start/End: Original strand, 37824274 - 37824460
Alignment:
Q  26 caactttaacaacgaaggcaaagaataacaccaatttggaattgttccatttaacatgttctcactcaaacccacatagctcaattttgaagtttttgtg 125  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||    || ||| |||||   ||||||||||||  |||||||    
T  37824274 caactctaacaacgaaggcaaagaataacaccaatgtggaattgttccatttaacatgttaaagcttaaatccacaatactcaattttgaacgttttgtg 37824373  T
Q  126 atttcaattggaattgggccaaccagtttgttaaatgataaatataaatcagaaagataaggtagatgaaaaagtgatgatggaact 212  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  37824374 atttcaattggaattgggccaactagtttgttagatgataaatataaataagaaagatgaggtagatgaaaaagtgatgatggaact 37824460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 32 - 212
Target Start/End: Original strand, 37697172 - 37697352
Alignment:
Q  32 taacaacgaaggcaaagaataacaccaatttggaattgttccatttaacatgttctcactcaaacccacatagctcaattttgaagtttttgtgatttca 131  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||  ||||  |||||| |||||||| |||  |||||||||||||    
T  37697172 taacaacgaaggcaaagaataacaccaatgtggaattgttccatttaacatgttatcatccaaaaacacataactcaatttggaacgttttgtgatttca 37697271  T
Q  132 attggaattgggccaaccagtttgttaaatgataaatataaatcagaaagataaggtagatgaaaaagtgatgatggaact 212  Q
    ||||||||||| ||||| ||||||||||||||||||  ||||| |||||| |  |||||||||||||||||||||||||||    
T  37697272 attggaattggcccaactagtttgttaaatgataaacctaaatgagaaaggtggggtagatgaaaaagtgatgatggaact 37697352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 25 - 212
Target Start/End: Original strand, 37436085 - 37436272
Alignment:
Q  25 acaactttaacaacgaaggcaaagaataacaccaatttggaattgttccatttaacatgttctcactcaa-acccacatagctcaattttgaagtttttg 123  Q
    |||||| |||||| ||||||||| |||||||||| | |||||||||||||||||||||||| | | || | ||||||||||||||||||| ||  |||||    
T  37436085 acaactctaacaatgaaggcaaataataacaccactgtggaattgttccatttaacatgttat-attctagacccacatagctcaattttaaacgttttg 37436183  T
Q  124 tgatttcaattggaattgggccaaccagtttgttaaatgataaatataaatcagaaagataaggtagatgaaaaagtgatgatggaact 212  Q
    | ||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||| |  |||||||||||||||||||||||||||    
T  37436184 taatttcaattggaattgggccaactagtttgttaaatgataaatctaaatgagaaaggtggggtagatgaaaaagtgatgatggaact 37436272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 39 - 212
Target Start/End: Complemental strand, 37392660 - 37392487
Alignment:
Q  39 gaaggcaaagaataacaccaatttggaattgttccatttaacatgttctcactcaaacccacatagctcaattttgaagtttttgtgatttcaattggaa 138  Q
    |||||||||||||||||||| |  |||||||| ||||| ||||||||   ||  |||  ||||  ||||||||||||   ||||||||||| || |||||    
T  37392660 gaaggcaaagaataacaccactgcggaattgtaccattaaacatgttagaacctaaattcacaatgctcaattttgagcgttttgtgatttgaactggaa 37392561  T
Q  139 ttgggccaaccagtttgttaaatgataaatataaatcagaaagataaggtagatgaaaaagtgatgatggaact 212  Q
    |||||||||| ||||||||| ||||||||| ||||  |||||| |  |||||||||||||||||||||||||||    
T  37392560 ttgggccaactagtttgttagatgataaatctaaaaaagaaaggttgggtagatgaaaaagtgatgatggaact 37392487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 85
Target Start/End: Original strand, 37343272 - 37343319
Alignment:
Q  38 cgaaggcaaagaataacaccaatttggaattgttccatttaacatgtt 85  Q
    ||||||||||| | ||||||||||| ||||| ||||||||||||||||    
T  37343272 cgaaggcaaagtaaaacaccaatttagaatttttccatttaacatgtt 37343319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 79
Target Start/End: Original strand, 37429119 - 37429164
Alignment:
Q  34 acaacgaaggcaaagaataacaccaatttggaattgttccatttaa 79  Q
    ||||||||||||| ||||||||||| | |||||||||||| |||||    
T  37429119 acaacgaaggcaaggaataacaccagtgtggaattgttccgtttaa 37429164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 112; Significance: 9e-57; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 21 - 212
Target Start/End: Original strand, 14553484 - 14553675
Alignment:
Q  21 agggacaactttaacaacgaaggcaaagaataacaccaatttggaattgttccatttaacatgttctcactcaaacccacatagctcaattttgaagttt 120  Q
    ||||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||| ||| ||||||||||||||||||||  ||    
T  14553484 agggataactctaacaacgaaggcaaagaataacaccaatgtggaattgttccatttaacatgttataacttaaatccacatagctcaattttgaacgtt 14553583  T
Q  121 ttgtgatttcaattggaattgggccaaccagtttgttaaatgataaatataaatcagaaagataaggtagatgaaaaagtgatgatggaact 212  Q
    ||||||||||||||| ||| || ||||| ||||||||| |||||||| |||||  |||||| | |||||||| |||||||||||||||||||    
T  14553584 ttgtgatttcaattgcaatcggcccaactagtttgttagatgataaacataaaaaagaaagctgaggtagattaaaaagtgatgatggaact 14553675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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