View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6600_high_15 (Length: 216)
Name: NF6600_high_15
Description: NF6600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6600_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 131; Significance: 4e-68; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 58 - 204
Target Start/End: Original strand, 5879199 - 5879345
Alignment:
| Q |
58 |
gcaataaaatttgtcattgcacatatatagagcataaaattcttaactacctgtccaatgcctcaagatatttttgctttctaagttcaaagaatatttt |
157 |
Q |
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| T |
5879199 |
gcaataaaatttgtcattgcacatatattgagcataaaattcttaactacctgtccaatgcctcaagatatttttgctttctaagttcaaagaatatttt |
5879298 |
T |
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| Q |
158 |
ggtggagtgaccgttgtcttcaatttttgtgaatccagacagatatt |
204 |
Q |
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| T |
5879299 |
ggtggagtgaccgttgtcttcaacttttgtgaatccagttagatatt |
5879345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 54 - 204
Target Start/End: Original strand, 5875306 - 5875456
Alignment:
| Q |
54 |
atttgcaataaaatttgtcattgcacatatatagagcataaaattcttaactacctgtccaatgcctcaagatatttttgctttctaagttcaaagaata |
153 |
Q |
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| T |
5875306 |
atttgcaataaaatttgccattgcacatatatagagcataaaattcttaactacctgaccaatgcctcaagatatttttgctttctaagttcaaagaata |
5875405 |
T |
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| Q |
154 |
ttttggtggagtgaccgttgtcttcaatttttgtgaatccagacagatatt |
204 |
Q |
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| T |
5875406 |
ttttggtggagtgactgttatcttcaacttttgtgaatccagatagatatt |
5875456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 54 - 193
Target Start/End: Complemental strand, 20430315 - 20430176
Alignment:
| Q |
54 |
atttgcaataaaatttgtcattgcacatatatagagcataaaattcttaactacctgtccaatgcctcaagatatttttgctttctaagttcaaagaata |
153 |
Q |
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| T |
20430315 |
atttgcaataaaatttgttgttgcacatatatagagcataaaattcttaaatacctgtcgactgcctaaagatatttttgttttcaaagctcaaaatata |
20430216 |
T |
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| Q |
154 |
ttttggtggagtgaccgttgtcttcaatttttgtgaatcc |
193 |
Q |
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| T |
20430215 |
ttttggtttagtgatcgttgtcttcaacttttgtgaatcc |
20430176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 54 - 202
Target Start/End: Original strand, 20431659 - 20431806
Alignment:
| Q |
54 |
atttgcaataaaatttgtcattgcacatatatagagcataaaattcttaactacctgtccaatgcctcaagatatttttgctttctaagttcaaagaata |
153 |
Q |
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| T |
20431659 |
atttgcaataaaatttactattgcacgtatataaagcataaaattcttaaatacatgtccaatgcctcaagatatttttgttttctaagctcaaaatata |
20431758 |
T |
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| Q |
154 |
ttttggtggagtgaccgttgtcttcaatttttgtgaatccagacagata |
202 |
Q |
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| T |
20431759 |
ttttgattgagtgatcgttgt-ttcaacttttgcgaatcctgatagata |
20431806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 89 - 202
Target Start/End: Original strand, 20409403 - 20409516
Alignment:
| Q |
89 |
gcataaaattcttaactacctgtccaatgcctcaagatatttttgctttctaagttcaaagaatattttggtggagtgaccgttgtcttcaatttttgtg |
188 |
Q |
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||||||||||||||| |||||| || ||| ||||||||||||||| |||||||| ||||| |||||||| | |||||| || ||||||||| ||||||| |
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| T |
20409403 |
gcataaaattcttaaatacctgacctatgtctcaagatatttttgttttctaagctcaaaatatattttgattgagtgatcgctgtcttcaacttttgtg |
20409502 |
T |
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| Q |
189 |
aatccagacagata |
202 |
Q |
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| T |
20409503 |
aatcctgatagata |
20409516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 97 - 202
Target Start/End: Complemental strand, 20409390 - 20409285
Alignment:
| Q |
97 |
ttcttaactacctgtccaatgcctcaagatatttttgctttctaagttcaaagaatattttggtggagtgaccgttgtcttcaatttttgtgaatccaga |
196 |
Q |
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||||||| ||||||||||||||||||||||||||||| |||||||| ||||| |||||||| | ||||| ||||||| |||| |||| ||||||| || |
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| T |
20409390 |
ttcttaaatacctgtccaatgcctcaagatatttttgttttctaagctcaaaatatattttgatttagtgatcgttgtcatcaacttttatgaatcctga |
20409291 |
T |
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| Q |
197 |
cagata |
202 |
Q |
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||||| |
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| T |
20409290 |
tagata |
20409285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 118 - 204
Target Start/End: Original strand, 20444541 - 20444627
Alignment:
| Q |
118 |
cctcaagatatttttgctttctaagttcaaagaatattttggtggagtgaccgttgtcttcaatttttgtgaatccagacagatatt |
204 |
Q |
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| T |
20444541 |
cctcaagatatttttgttttctaagctcaaaatatattttgattgagtgatcgttgtcttcaacttttgtgaatcctgatagatatt |
20444627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 115 - 202
Target Start/End: Complemental strand, 20444526 - 20444439
Alignment:
| Q |
115 |
atgcctcaagatatttttgctttctaagttcaaagaatattttggtggagtgaccgttgtcttcaatttttgtgaatccagacagata |
202 |
Q |
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| T |
20444526 |
atgcctcaagatatttttgttttctatgctcaaaatatattttgatttagtgatcgttgtcttcaacttttgtgaatcctgatagata |
20444439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 120 - 204
Target Start/End: Original strand, 20424842 - 20424926
Alignment:
| Q |
120 |
tcaagatatttttgctttctaagttcaaagaatattttggtggagtgaccgttgtcttcaatttttgtgaatccagacagatatt |
204 |
Q |
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| T |
20424842 |
tcaagatatttttgttttctaagctcaaaatatattttgactaagtgatcgttgtcttcaacttttgtgaatcctgatagatatt |
20424926 |
T |
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