View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6600_high_2 (Length: 532)
Name: NF6600_high_2
Description: NF6600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6600_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 13 - 515
Target Start/End: Original strand, 41834707 - 41835209
Alignment:
| Q |
13 |
aaaattacatagatctcaaaagtggtaaacaagtgtatcttagctccctcnnnnnnnnnnnntatatcttagtagttaatgaaacaacgaaattggttaa |
112 |
Q |
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| T |
41834707 |
aaaattacatagatctcaaaagtggtaaaca-gtgtatcttagctccctcaaaaaacaaaaatatatcttagtagttaatgaaacaacgaaattggttaa |
41834805 |
T |
|
| Q |
113 |
tgacataacatgttatgaaaattcttttctatattaaaaagcatgnnnnnnn-gttcaatgtaccctacttatcattactcctactttaatgtacccttg |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41834806 |
tgacataacatgttatgaaaattcttttctatattaaaaagcatgttttttttgttcaatgtaccctacttatcattactcctactttaatgtacccttg |
41834905 |
T |
|
| Q |
212 |
gttgctaataatcagcttctgacaaatataatatgtagaggatttgtgaggggtaaaagtggtgaattgagagtttcatgtttcaacactttcaaaagca |
311 |
Q |
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||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41834906 |
gttgcgaatgatcagcttctgacaaatataatatgtagaggatttgtgaggggtaaaagtggtgaattgagagtttcatgtttcaacactttcaaaagca |
41835005 |
T |
|
| Q |
312 |
tgttgaagaaccttaaatgtatcaaaatgaaagatacatgatcctttacaagaagaagcaaagcagacccactcctgcaagagtaaaagaagaatcaaac |
411 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41835006 |
tgttgaagaaccttaaatgtatcaaaatgaaagataaatgatcctttacgagaagcagcaaagcagacccactcctgcaagagtaaaagaagaatcaaac |
41835105 |
T |
|
| Q |
412 |
tggatgaggataattgctgcctttcttatcttagtcattctagnnnnnnnttaggcaatttcttttttcacggtactcttttcttacgtgtcctattcaa |
511 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||| |||| |
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| T |
41835106 |
tggatgaggataattgctgcctttcttatcttagtcattctagaaaaaaattaggcaatttcttttttcacggtactctcttcttacatgtcctactcaa |
41835205 |
T |
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| Q |
512 |
ttcc |
515 |
Q |
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|||| |
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| T |
41835206 |
ttcc |
41835209 |
T |
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