View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6600_high_6 (Length: 314)
Name: NF6600_high_6
Description: NF6600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6600_high_6 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 38877614 - 38877301
Alignment:
| Q |
1 |
agaggtccatcgcatgaaagctcactagtactcccatcaatgaaggttccatcggcaaagataacctgagaagagtaatatcaaagagttattaatatct |
100 |
Q |
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| T |
38877614 |
agaggtccatcgcatgaaagctcactagtactcccatcaatgaaggttccatcggcaaagataacctgagaagagtaatattaaagagttattaatatct |
38877515 |
T |
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| Q |
101 |
ggtaggactttggatatcaaagtaatattgaacatcatttaaggaccaaaacataatcaatttgtttaggcgctgtgaaggttaatcagagcagacctct |
200 |
Q |
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| T |
38877514 |
ggtaggactttggatatcaaagtaatattgaacatcatttaaggaccaaaacataatcaatttgtttaggcgctgtgaaggttaatcagagcagacctct |
38877415 |
T |
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| Q |
201 |
gatgcatatccaggagtggtacccgcaattggtttggtgtatgaccccacgggagagcttctctgaacagcctcacaaaaagcaaggagacgctcacggc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38877414 |
gatgcatatccaggagtggtacccgcaattggtttggtgtatgaccccacaggagagcttctctgaacagcctcacaaaaagcaaggagacgctcacggc |
38877315 |
T |
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| Q |
301 |
ttccaagttgtacg |
314 |
Q |
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|||||||||||||| |
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| T |
38877314 |
ttccaagttgtacg |
38877301 |
T |
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