View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6600_high_8 (Length: 287)
Name: NF6600_high_8
Description: NF6600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6600_high_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 21 - 275
Target Start/End: Original strand, 7329694 - 7329948
Alignment:
| Q |
21 |
aaaggtttgctttagtagcgacaatagcgatgcaacacaacaatattctataaatctgatcacaaagtctgatgcatccagttctgatttaaggtcatgt |
120 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7329694 |
aaaggtttgctttagtagcgacaatagcaatgcaacacaacaatattctataaatctgatcacaaagtctgatgcatccagttctgatttaaggtcatgt |
7329793 |
T |
|
| Q |
121 |
aactaatgaatctgaaatgaatgaaatgagctttggaaacttgagaatgaggaaaactctattatgaaattaccactgcagtacatatctgatagttcca |
220 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
7329794 |
aactaatgaatctgaaatgaatgaaatgaactttggaaacttgagaatgaggaaaactctattaggaaattaccactgcagtacatatctgatagttcca |
7329893 |
T |
|
| Q |
221 |
agcactacagtttgcaacttgttggcatgttataagatgctataaacttgagaat |
275 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
7329894 |
agcactacagtttgcaacttgttggcatattataagatgctataaacttgagaat |
7329948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 21 - 191
Target Start/End: Complemental strand, 7310283 - 7310115
Alignment:
| Q |
21 |
aaaggtttgctttagtagcgacaatagcgatgcaacacaacaatattctataaatctgatcacaaagtctgatgcatccagttctgatttaaggtcatgt |
120 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
7310283 |
aaagttttgctttagttgcgacaatagcgatgca---caacaatattctataaatctgatcacaaagtctgatgcatccagttctgatttagggtcatgt |
7310187 |
T |
|
| Q |
121 |
aactaatgaatctg-aaatgaatgaaatgagctttggaaacttgagaatgaggaaaactctattatgaaatt |
191 |
Q |
| |
|
||| ||| ||||| |||||||| | | || ||| ||||||||||||| | |||||||| |||||| ||||| |
|
|
| T |
7310186 |
tactgatgcatctgaaaatgaattagaagaacttcggaaacttgagaaaggggaaaactttattatcaaatt |
7310115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 137
Target Start/End: Complemental strand, 7300924 - 7300846
Alignment:
| Q |
57 |
acaacaatattctataaatctgatcacaaagtctgatgcatccagttctgatttaaggtcatgtaactaatgaatctgaaa |
137 |
Q |
| |
|
||||||| ||||| ||||| ||||| || ||||||||||||||||||||||||| |||||||| ||||||| ||| |||| |
|
|
| T |
7300924 |
acaacaacattctgtaaatttgatcgca--gtctgatgcatccagttctgatttagggtcatgttactaatgcatccgaaa |
7300846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 141 - 188
Target Start/End: Complemental strand, 22482321 - 22482274
Alignment:
| Q |
141 |
atgaaatgagctttggaaacttgagaatgaggaaaactctattatgaa |
188 |
Q |
| |
|
||||||||||||||||||| || ||||| |||||||||||||||||| |
|
|
| T |
22482321 |
atgaaatgagctttggaaagttaagaatcgggaaaactctattatgaa |
22482274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 247
Target Start/End: Complemental strand, 7310079 - 7310039
Alignment:
| Q |
207 |
atctgatagttccaagcactacagtttgcaacttgttggca |
247 |
Q |
| |
|
||||||| ||||||||||||||| |||| |||||||||||| |
|
|
| T |
7310079 |
atctgattgttccaagcactacattttgtaacttgttggca |
7310039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University