View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6600_high_9 (Length: 278)

Name: NF6600_high_9
Description: NF6600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6600_high_9
NF6600_high_9
[»] chr6 (2 HSPs)
chr6 (10-261)||(1016184-1016429)
chr6 (158-206)||(9024177-9024225)
[»] chr7 (3 HSPs)
chr7 (159-212)||(37775993-37776046)
chr7 (156-213)||(4909159-4909216)
chr7 (156-213)||(42720884-42720941)
[»] chr8 (7 HSPs)
chr8 (153-212)||(1979417-1979477)
chr8 (154-213)||(6501501-6501560)
chr8 (156-205)||(6252495-6252544)
chr8 (160-213)||(8917234-8917287)
chr8 (153-206)||(16987917-16987970)
chr8 (152-200)||(29096950-29096998)
chr8 (153-205)||(32691748-32691800)
[»] chr4 (5 HSPs)
chr4 (156-212)||(33950144-33950200)
chr4 (149-213)||(36768843-36768907)
chr4 (156-205)||(18513243-18513292)
chr4 (149-213)||(11135288-11135352)
chr4 (151-207)||(12710006-12710062)
[»] chr1 (3 HSPs)
chr1 (153-213)||(18556020-18556080)
chr1 (154-206)||(31667431-31667483)
chr1 (156-200)||(43609825-43609869)
[»] chr5 (1 HSPs)
chr5 (155-205)||(30267525-30267575)
[»] chr3 (4 HSPs)
chr3 (156-214)||(20691327-20691385)
chr3 (156-213)||(33331937-33331995)
chr3 (166-206)||(13164964-13165004)
chr3 (166-206)||(13290688-13290728)
[»] chr2 (4 HSPs)
chr2 (162-212)||(18512137-18512187)
chr2 (156-206)||(18570980-18571030)
chr2 (156-210)||(44605136-44605190)
chr2 (149-205)||(18622416-18622472)
[»] scaffold0002 (1 HSPs)
scaffold0002 (166-206)||(141984-142024)


Alignment Details
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 10 - 261
Target Start/End: Original strand, 1016184 - 1016429
Alignment:
Q  10 aagaatataacacaaacgaaacgaatgtaatcacatgtgtcgttgttggacaagcgtcagacagacagacagtcagtcgccagacacatctttgatcgga 109  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||  |    
T  1016184 aagaaaataacacaaacgaaacgaatgtaatcacatgtgtcgttgttggacaagtgtgagacagacagacagtcagtcaccagacacatctttgatcata 1016283  T
Q  110 agtgtcatgctacaaaacatttcattaaacaacactaacacatcggtaataatttgagaaaataacgtaattaaaggtaatcacatgtgtcagtgtcaga 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||      ||||||||    
T  1016284 agtgtcatgctacaaaacatttcattaaacaacactaacacatcggtaataatttgagaaaataacgtagttaaaggtaatcacat------gtgtcaga 1016377  T
Q  210 cacactgattagaagtgttgacactgaaacatgataatgacgcattgatact 261  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  1016378 cacactgattagaagtgttgacactgaaacatgataatgaggcattgatact 1016429  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 206
Target Start/End: Complemental strand, 9024225 - 9024177
Alignment:
Q  158 ataatttgagaaaataacgtaattaaaggtaatcacatgtgtcagtgtc 206  Q
    ||||||||||||||| || ||||| || ||||||| |||||||||||||    
T  9024225 ataatttgagaaaatgacataattcaatgtaatcatatgtgtcagtgtc 9024177  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 212
Target Start/End: Original strand, 37775993 - 37776046
Alignment:
Q  159 taatttgagaaaataacgtaattaaaggtaatcacatgtgtcagtgtcagacac 212  Q
    |||||||||||||| || |||||||| |||||||||||||||||||| ||||||    
T  37775993 taatttgagaaaatgacataattaaatgtaatcacatgtgtcagtgtaagacac 37776046  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 213
Target Start/End: Original strand, 4909159 - 4909216
Alignment:
Q  156 taataatttgagaaaataacgtaattaaaggtaatcacatgtgtcagtgtcagacaca 213  Q
    ||||||||||||||||| || ||||| |  ||||||| ||||||||||||| ||||||    
T  4909159 taataatttgagaaaattacataattcattgtaatcatatgtgtcagtgtcggacaca 4909216  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 213
Target Start/End: Complemental strand, 42720941 - 42720884
Alignment:
Q  156 taataatttgagaaaataacgtaattaaaggtaatcacatgtgtcagtgtcagacaca 213  Q
    ||||||||||| ||||| || |||||||| ||||| | ||||||||||||| ||||||    
T  42720941 taataatttgaaaaaatcacataattaaatgtaattatatgtgtcagtgtctgacaca 42720884  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 212
Target Start/End: Original strand, 1979417 - 1979477
Alignment:
Q  153 cggtaataatttgagaaaataacgtaattaaaggtaatcacat-gtgtcagtgtcagacac 212  Q
    |||||||||||||||||||| |  |||||||| |||||||||| |||||| ||||||||||    
T  1979417 cggtaataatttgagaaaattaattaattaaatgtaatcacatagtgtcaatgtcagacac 1979477  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 154 - 213
Target Start/End: Original strand, 6501501 - 6501560
Alignment:
Q  154 ggtaataatttgagaaaataacgtaattaaaggtaatcacatgtgtcagtgtcagacaca 213  Q
    ||||||||||||||| ||| |  |||||||| |||| |||||||||| ||||||||||||    
T  6501501 ggtaataatttgagagaatgaaataattaaatgtaaccacatgtgtcggtgtcagacaca 6501560  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 205
Target Start/End: Complemental strand, 6252544 - 6252495
Alignment:
Q  156 taataatttgagaaaataacgtaattaaaggtaatcacatgtgtcagtgt 205  Q
    |||||||||||||||||||  |||||||| |||||||||| ||| |||||    
T  6252544 taataatttgagaaaataatttaattaaatgtaatcacatttgttagtgt 6252495  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 213
Target Start/End: Complemental strand, 8917287 - 8917234
Alignment:
Q  160 aatttgagaaaataacgtaattaaaggtaatcacatgtgtcagtgtcagacaca 213  Q
    |||||||||||||||| ||||| || ||||||| |||||||  |||||||||||    
T  8917287 aatttgagaaaataacataattgaatgtaatcagatgtgtccatgtcagacaca 8917234  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 153 - 206
Target Start/End: Original strand, 16987917 - 16987970
Alignment:
Q  153 cggtaataatttgagaaaataacgtaattaaaggtaatcacatgtgtcagtgtc 206  Q
    |||||||||||||||||||| |||||||| || | ||||| |||||||| ||||    
T  16987917 cggtaataatttgagaaaatcacgtaattcaatgcaatcatatgtgtcaatgtc 16987970  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 200
Target Start/End: Original strand, 29096950 - 29096998
Alignment:
Q  152 tcggtaataatttgagaaaataacgtaattaaaggtaatcacatgtgtc 200  Q
    ||||||||||||| |||||||||  ||||| || |||||||||||||||    
T  29096950 tcggtaataatttaagaaaataaattaattgaatgtaatcacatgtgtc 29096998  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 205
Target Start/End: Original strand, 32691748 - 32691800
Alignment:
Q  153 cggtaataatttgagaaaataacgtaattaaaggtaatcacatgtgtcagtgt 205  Q
    ||||| |||||| ||||||| || ||||| || ||||||||||||||||||||    
T  32691748 cggtagtaatttaagaaaatgacataattgaatgtaatcacatgtgtcagtgt 32691800  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 33950144 - 33950200
Alignment:
Q  156 taataatttgagaaaataacgtaattaaaggtaatcacatgtgtcagtgtcagacac 212  Q
    ||||||||||||||||| || ||||| || ||||||| ||||||| |||||||||||    
T  33950144 taataatttgagaaaatcacataatttaatgtaatcatatgtgtcggtgtcagacac 33950200  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 213
Target Start/End: Complemental strand, 36768907 - 36768843
Alignment:
Q  149 acatcggtaataatttgagaaaataacgtaattaaaggtaatcacatgtgtcagtgtcagacaca 213  Q
    ||||| |||||||||||||| ||| |  ||||| || ||||||||||||||||||||| ||||||    
T  36768907 acatcagtaataatttgagagaattaattaattgaatgtaatcacatgtgtcagtgtccgacaca 36768843  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 205
Target Start/End: Complemental strand, 18513292 - 18513243
Alignment:
Q  156 taataatttgagaaaataacgtaattaaaggtaatcacatgtgtcagtgt 205  Q
    ||||||||||||||||| || ||||| || ||||||| ||||||||||||    
T  18513292 taataatttgagaaaatgacataattcaatgtaatcatatgtgtcagtgt 18513243  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 213
Target Start/End: Complemental strand, 11135352 - 11135288
Alignment:
Q  149 acatcggtaataatttgagaaaataacgtaattaaaggtaatcacatgtgtcagtgtcagacaca 213  Q
    |||||| ||||| ||||||||||| || ||||| ||  |||| |||||||||| |||||||||||    
T  11135352 acatcgctaatagtttgagaaaattacataattcaatataattacatgtgtcactgtcagacaca 11135288  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 207
Target Start/End: Original strand, 12710006 - 12710062
Alignment:
Q  151 atcggtaataatttgagaaaataacgtaattaaaggtaatcacatgtgtcagtgtca 207  Q
    ||||||||||||||||||||||||  ||||| || |||| ||||| | |||||||||    
T  12710006 atcggtaataatttgagaaaataaattaattgaacgtaaacacatatatcagtgtca 12710062  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 213
Target Start/End: Complemental strand, 18556080 - 18556020
Alignment:
Q  153 cggtaataatttgagaaaataacgtaattaaaggtaatcacatgtgtcagtgtcagacaca 213  Q
    |||||||||||| | ||||| || ||||| |  ||||||||||||||||||||||||||||    
T  18556080 cggtaataatttaataaaatgacataattgactgtaatcacatgtgtcagtgtcagacaca 18556020  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 206
Target Start/End: Original strand, 31667431 - 31667483
Alignment:
Q  154 ggtaataatttgagaaaataacgtaattaaaggtaatcacatgtgtcagtgtc 206  Q
    ||||||||||| ||||||| || |||||||| ||||||||||||||| |||||    
T  31667431 ggtaataattttagaaaatgacataattaaatgtaatcacatgtgtcggtgtc 31667483  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 200
Target Start/End: Complemental strand, 43609869 - 43609825
Alignment:
Q  156 taataatttgagaaaataacgtaattaaaggtaatcacatgtgtc 200  Q
    |||||||||||||||||||| ||||| || |||||||||||||||    
T  43609869 taataatttgagaaaataacataattgaatgtaatcacatgtgtc 43609825  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 205
Target Start/End: Complemental strand, 30267575 - 30267525
Alignment:
Q  155 gtaataatttgagaaaataacgtaattaaaggtaatcacatgtgtcagtgt 205  Q
    ||||||||||||||||||||  |||||||| ||||||||| |||| |||||    
T  30267575 gtaataatttgagaaaataatataattaaatgtaatcacaagtgttagtgt 30267525  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 214
Target Start/End: Original strand, 20691327 - 20691385
Alignment:
Q  156 taataatttgagaaaataacgtaattaaaggtaatcacatgtgtcagtgtcagacacac 214  Q
    ||||||||||||||||| || ||||| |  ||||||| ||||||| |||||||||||||    
T  20691327 taataatttgagaaaatgacataattcagtgtaatcatatgtgtcggtgtcagacacac 20691385  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 213
Target Start/End: Complemental strand, 33331995 - 33331937
Alignment:
Q  156 taataatttgagaaaataac-gtaattaaaggtaatcacatgtgtcagtgtcagacaca 213  Q
    |||||||||||||||||||  || |||||| ||||| ||||||||| ||||||||||||    
T  33331995 taataatttgagaaaataaaagtgattaaatgtaattacatgtgtcggtgtcagacaca 33331937  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 206
Target Start/End: Original strand, 13164964 - 13165004
Alignment:
Q  166 agaaaataacgtaattaaaggtaatcacatgtgtcagtgtc 206  Q
    ||||||| || |||||||| |||||||||||||||||||||    
T  13164964 agaaaatgacataattaaaagtaatcacatgtgtcagtgtc 13165004  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 206
Target Start/End: Original strand, 13290688 - 13290728
Alignment:
Q  166 agaaaataacgtaattaaaggtaatcacatgtgtcagtgtc 206  Q
    ||||||| || |||||||| |||||||||||||||||||||    
T  13290688 agaaaatgacataattaaaagtaatcacatgtgtcagtgtc 13290728  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 212
Target Start/End: Complemental strand, 18512187 - 18512137
Alignment:
Q  162 tttgagaaaataacgtaattaaaggtaatcacatgtgtcagtgtcagacac 212  Q
    |||||||||||||  ||||| || |||||||||||||||||||||| ||||    
T  18512187 tttgagaaaataatataattcaatgtaatcacatgtgtcagtgtcacacac 18512137  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 206
Target Start/End: Original strand, 18570980 - 18571030
Alignment:
Q  156 taataatttgagaaaataacgtaattaaaggtaatcacatgtgtcagtgtc 206  Q
    ||||||||||||||||| || ||||| || ||||||| |||||||||||||    
T  18570980 taataatttgagaaaatgacataattcaatgtaatcatatgtgtcagtgtc 18571030  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 210
Target Start/End: Complemental strand, 44605190 - 44605136
Alignment:
Q  156 taataatttgagaaaataacgtaattaaaggtaatcacatgtgtcagtgtcagac 210  Q
    |||||||||||||||||||| ||||| || ||||| ||||||||| |||| ||||    
T  44605190 taataatttgagaaaataacataattcaatgtaattacatgtgtcggtgttagac 44605136  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 205
Target Start/End: Original strand, 18622416 - 18622472
Alignment:
Q  149 acatcggtaataatttgagaaaataacgtaattaaaggtaatcacatgtgtcagtgt 205  Q
    |||||| ||||||||| ||||||| || |||||||| | ||||||||||||| ||||    
T  18622416 acatcgataataatttaagaaaatgacataattaaatgcaatcacatgtgtcggtgt 18622472  T

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Target: scaffold0002 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 206
Target Start/End: Complemental strand, 142024 - 141984
Alignment:
Q  166 agaaaataacgtaattaaaggtaatcacatgtgtcagtgtc 206  Q
    ||||||| || |||||||| |||||||||||||||||||||    
T  142024 agaaaatgacataattaaaagtaatcacatgtgtcagtgtc 141984  T

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