View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6600_low_1 (Length: 555)
Name: NF6600_low_1
Description: NF6600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6600_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 290; Significance: 1e-162; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 235 - 543
Target Start/End: Original strand, 42850162 - 42850471
Alignment:
| Q |
235 |
atgaataactctaaacaacccacatcatcactcaaagagataacaatacaaagagcaaaaaaggggggaaaattggaacactaatagcacttcaattgga |
334 |
Q |
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| T |
42850162 |
atgaataactctaaacaacccacatcatcgctcaaagagataacaatacaaagagcaaaacaggggggaaaattggaacactaatagcacttcaattgga |
42850261 |
T |
|
| Q |
335 |
ttactaccatgaattagtgatcacacatgacataagaatcactatttataataagccctctcacaagaagactgaacccattgtc-aaaaaacctatcac |
433 |
Q |
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| T |
42850262 |
ttactaccatgaattagtgatcacacatgacataagaatcactatttataataagccctttcacaagaagactgaacccattgtcaaaaaaacctatcac |
42850361 |
T |
|
| Q |
434 |
aaacaaataacaccaaacacatataattccacaagactagcacaaacatcgacaagttgttatgcgaatctgtgaatcaaccattgtgtgtcgcttctac |
533 |
Q |
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| T |
42850362 |
aaacaaataacaccaaacacatataattccacaagactagcacaaacatcgacaagttgttatgcgaatctgtgaatcaaccattgtgtgtcgcttctac |
42850461 |
T |
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| Q |
534 |
ttgtgagtat |
543 |
Q |
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| T |
42850462 |
ttgtgagtat |
42850471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 17 - 191
Target Start/End: Original strand, 42849986 - 42850161
Alignment:
| Q |
17 |
caaacctcccttttattttcagaaaaacaagaacctcccctgctattaacttt-gtttagtttctgttaaaatatacacattgcttgacaaatatctcac |
115 |
Q |
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| T |
42849986 |
caaacctcccttttattttcagaaaaacaagaacctcccctgctattaacttttgtttagtttctgttaaaatatacacattgcttgacaaatatctcac |
42850085 |
T |
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| Q |
116 |
ctcctgtaacaagcagtgacctaggaacgtttcttccctaattttcaagcaatgtgaatctcactaaccaacaaac |
191 |
Q |
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| T |
42850086 |
ctcctgtaacaagcagtgacctaggaacgtttcttccctaattttcaagcaatgtgaatctcactagccaacaaac |
42850161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 203 - 482
Target Start/End: Complemental strand, 30941790 - 30941513
Alignment:
| Q |
203 |
atgcaaactccaagatttaatcaaaatccaatatgaataactctaaacaacccacatcatcactcaaagagataacaatacaaagagcaaaaaagggggg |
302 |
Q |
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||||||||||||| |||||||||||||||||||||| |||||| || ||||||| |||||| ||||||||||||| ||||||| ||||||||| |||| |
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| T |
30941790 |
atgcaaactccaatatttaatcaaaatccaatatgagtaactccaagcaacccatgtcatcagtcaaagagataaccatacaaatagcaaaaaa-gggga |
30941692 |
T |
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| Q |
303 |
aaaattggaacactaatagcacttcaattggattactaccatgaattagtgatcacacatgacat-aagaatcactatttataataagccctctcacaag |
401 |
Q |
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||| ||||||||| ||||||||| ||||||||||| ||||| ||| |||||||||| |||||||| |||| ||||||||| ||| | | ||| ||||| | |
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| T |
30941691 |
aaatttggaacaccaatagcactgcaattggattaataccacgaagtagtgatcactcatgacataaagagtcactatttgtaaaatgtcctttcacagg |
30941592 |
T |
|
| Q |
402 |
aagactgaacccattgtcaaaaaacctatcacaaacaaataacaccaaacacatataattccacaagactagcacaaacat |
482 |
Q |
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||||||||||||| |||| |||||||||||||||| ||||||||||||||| ||||||||| | ||||||||| |||||| |
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| T |
30941591 |
aagactgaacccaatgtc--aaaacctatcacaaaccaataacaccaaacacctataattccgccagactagcaaaaacat |
30941513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 69 - 165
Target Start/End: Complemental strand, 30941887 - 30941792
Alignment:
| Q |
69 |
tgtttagtttctgttaaaatatacacattgcttgacaaatatctcacctcctgtaacaagcagtgacctaggaacgtttcttccctaattttcaagc |
165 |
Q |
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| T |
30941887 |
tgtttagcttccgttgaaatataaacattgcttg-caaatatttcacctcccgtaacaagcagtgacctaggaacatttcttctctaattttcaagc |
30941792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 511 - 543
Target Start/End: Complemental strand, 30941156 - 30941124
Alignment:
| Q |
511 |
caaccattgtgtgtcgcttctacttgtgagtat |
543 |
Q |
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| T |
30941156 |
caaccattgtatgtcgcttctacttgtgagtat |
30941124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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