View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6600_low_10 (Length: 269)

Name: NF6600_low_10
Description: NF6600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6600_low_10
NF6600_low_10
[»] chr4 (1 HSPs)
chr4 (13-269)||(5867490-5867746)
[»] chr8 (2 HSPs)
chr8 (13-269)||(36965586-36965842)
chr8 (14-269)||(36977325-36977580)


Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 13 - 269
Target Start/End: Original strand, 5867490 - 5867746
Alignment:
Q  13 aatatggagggaattatcagtgatgttcatcttgcaaactttagcaacctcaaagtgttggacctatcttttaatcatgtaactttgaacatgagcaaaa 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5867490 aatatggagggaattatcagtgatgttcatcttgcaaactttagcaacctcaaagtgttggacctatcttttaatcatgtaactttgaacatgagcaaaa 5867589  T
Q  113 attgggtccctcctttccaacttgaaactataggtttggccaattgtcatttgggcccacaatttccaaaatggattcaaacgcagaagaatttctctca 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  5867590 attgggtccctcctttccaacttgaaactataggtttggccaattgtcatttgggcccacaatttccaaaatggattcaaacgcagaagaatttctccca 5867689  T
Q  213 tattgatatatcaaatgcaagtgtctttgatatcgtgccaaattggttttgggattt 269  Q
    ||||||||| ||||||||| |||||| ||||   |||||||||||||||||||||||    
T  5867690 tattgatatctcaaatgcaggtgtctctgattatgtgccaaattggttttgggattt 5867746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 13 - 269
Target Start/End: Complemental strand, 36965842 - 36965586
Alignment:
Q  13 aatatggagggaattatcagtgatgttcatcttgcaaactttagcaacctcaaagtgttggacctatcttttaatcatgtaactttgaacatgagcaaaa 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  36965842 aatatggagggaattatcagtgatgttcatcttgcaaactttagcaacctcaaagtgttggacctatcttttaatgatgtaactttgaacatgagcaaaa 36965743  T
Q  113 attgggtccctcctttccaacttgaaactataggtttggccaattgtcatttgggcccacaatttccaaaatggattcaaacgcagaagaatttctctca 212  Q
    ||||| ||||||||||||||||||||| |||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||| || ||    
T  36965742 attggatccctcctttccaacttgaaaatataggtttggcgaaatgtcatttgggccctcaatttccaaaatggattcaaacgcagaagaatttttccca 36965643  T
Q  213 tattgatatatcaaatgcaagtgtctttgatatcgtgccaaattggttttgggattt 269  Q
    ||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||    
T  36965642 tattgatatatcaaatgcaggtgtctttgatattgtaccaaattggttttgggattt 36965586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 14 - 269
Target Start/End: Complemental strand, 36977580 - 36977325
Alignment:
Q  14 atatggagggaattatcagtgatgttcatcttgcaaactttagcaacctcaaagtgttggacctatcttttaatcatgtaactttgaacatgagcaaaaa 113  Q
    ||||||||||||||||||||||||||||| | || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  36977580 atatggagggaattatcagtgatgttcatttagctaacttcagcaacctcaaagtgttggacctatcttttaatcatgtaactttgaacatgagcgaaaa 36977481  T
Q  114 ttgggtccctcctttccaacttgaaactataggtttggccaattgtcatttgggcccacaatttccaaaatggattcaaacgcagaagaatttctctcat 213  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||  ||||||||| ||||||||||||| |||||||||||||| |||    
T  36977480 ttgggtccctcctttccaacttgaaattataggtttggccaattgtcatttgggccatcaatttccacaatggattcaaactcagaagaatttctcccat 36977381  T
Q  214 attgatatatcaaatgcaagtgtctttgatatcgtgccaaattggttttgggattt 269  Q
    |||||||| |||||| ||||||||  |||||  |||||||||||||||||||||||    
T  36977380 attgatatctcaaatacaagtgtcggtgatactgtgccaaattggttttgggattt 36977325  T

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