View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6600_low_11 (Length: 269)
Name: NF6600_low_11
Description: NF6600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6600_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 19 - 257
Target Start/End: Original strand, 33367408 - 33367646
Alignment:
| Q |
19 |
ggacgttagtttaacatgttaatataattggtgtccttaaaatagagcttatatatgaagttacatcagtgcatgtcaggttcatttatcctacaaaaac |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
33367408 |
ggacgttagtttaacatgttaatataattggtgtccttaaaatagagcttatatatgaagttacattagtgcatgtcaggttcatttatcctacaaaaac |
33367507 |
T |
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| Q |
119 |
atagaaggttcatttatttaatggtgggaagtatattatatcatcatgcttatgcacttaataagtgcttagatacaattatatcggtttggcacttagt |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
33367508 |
atagaaggttcatttatttaatggtgggaagtatattatataatcatgcttatgcacttagtaagtgcttagatacaattatatcggtttggcacttagt |
33367607 |
T |
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| Q |
219 |
gtaaggtgcagttcagttatgtactctgtacttagggta |
257 |
Q |
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| T |
33367608 |
gtaaggtgcagttcagttatgtactctgtacttagggta |
33367646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 19 - 257
Target Start/End: Complemental strand, 31524092 - 31523854
Alignment:
| Q |
19 |
ggacgttagtttaacatgttaatataattggtgtccttaaaatagagcttatatatgaagttacatcagtgcatgtcaggttcatttatcctacaaaaac |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31524092 |
ggacgttagtttaacatgttaatataattggtgtccttaaaatagagcttatatatgaagttacatcagtgcatgtcaggttcatttatcctacaaaaac |
31523993 |
T |
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| Q |
119 |
atagaaggttcatttatttaatggtgggaagtatattatatcatcatgcttatgcacttaataagtgcttagatacaattatatcggtttggcacttagt |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
31523992 |
gtagaaggttcatttatttaatggtgggaagtatattatatcatcatgcttatgcacttagtaagtgcttagatacaattatatcggtttggcacttagt |
31523893 |
T |
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| Q |
219 |
gtaaggtgcagttcagttatgtactctgtacttagggta |
257 |
Q |
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| T |
31523892 |
gtaaggtgcagttcagatatgtactctgtacttggggta |
31523854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 19 - 257
Target Start/End: Complemental strand, 49194050 - 49193812
Alignment:
| Q |
19 |
ggacgttagtttaacatgttaatataattggtgtccttaaaatagagcttatatatgaagttacatcagtgcatgtcaggttcatttatcctacaaaaac |
118 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49194050 |
ggacgttagtttaacatgttaatataattggtgtccttaaaatagagcttatatatgaagttacatcagtgcatgtcaggttcatttatcctacaaaaac |
49193951 |
T |
|
| Q |
119 |
atagaaggttcatttatttaatggtgggaagtatattatatcatcatgcttatgcacttaataagtgcttagatacaattatatcggtttggcacttagt |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
49193950 |
gtagaaggttcatttatttaatggtgggaagtatattatatcatcatgcttatgcacttagtaagtgcttagatacaattatatcggtttggcacttagt |
49193851 |
T |
|
| Q |
219 |
gtaaggtgcagttcagttatgtactctgtacttagggta |
257 |
Q |
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||||||||||||||||||||||||| ||||||| ||||| |
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| T |
49193850 |
gtaaggtgcagttcagttatgtactttgtactttgggta |
49193812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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