View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6600_low_12 (Length: 259)
Name: NF6600_low_12
Description: NF6600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6600_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 13 - 249
Target Start/End: Complemental strand, 20690410 - 20690177
Alignment:
| Q |
13 |
acttggttgatgagaacaaaggatcctcttctggttctgacacgtgagttcgctgtaaatcagttattaatactgctggatactactttcaatgtatgtt |
112 |
Q |
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| T |
20690410 |
acttggttgatgagaacaaaggatcctcttctggttctgacacgtgagtttgctgtaaatcagttattaatactgctgg-ta--actttcaatgtatgtt |
20690314 |
T |
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| Q |
113 |
atgatccgatttaaggaaaaagcatgaactgaagcttttgattttatcatttgtcacaggaaaaagcgtgaacgcgagtttaaggttacaattaagttag |
212 |
Q |
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| T |
20690313 |
atgatccgatttaaggaaaaagcgtgaactgaagcttttgattttatcatttgtaacaggaaaaagcgtgaacgcgagtttaaggttacaattaagttag |
20690214 |
T |
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| Q |
213 |
cttcggaacccgatttgaaccatcttgcacaggttct |
249 |
Q |
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| T |
20690213 |
cttcggaacccgatttgaaccatcttgctcagtttct |
20690177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 151 - 216
Target Start/End: Complemental strand, 20665931 - 20665866
Alignment:
| Q |
151 |
tgattttatcatttgtcacaggaaaaagcgtgaacgcgagtttaaggttacaattaagttagcttc |
216 |
Q |
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| T |
20665931 |
tgattttatcttttgtcacaggaaaaagcgtgaacgcgagtttaaggttacaattaagtttgcttc |
20665866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 13 - 72
Target Start/End: Complemental strand, 20666060 - 20666001
Alignment:
| Q |
13 |
acttggttgatgagaacaaaggatcctcttctggttctgacacgtgagttcgctgtaaat |
72 |
Q |
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| T |
20666060 |
acttggttgatgagaacaaaggatcctcttctggttctgacaagtgagttcgctgaaaat |
20666001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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