View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6600_low_13 (Length: 240)
Name: NF6600_low_13
Description: NF6600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6600_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 5878733 - 5878512
Alignment:
| Q |
1 |
tgattagggatcatccattactttcaacatatcaagatgcaaattgggggagaaagaatgtgatagatgaaattaagaatatcatagagaaaaatcctat |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
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| T |
5878733 |
tgattagggatcatccattactttcaacatatcaagatgcaaattgggggagaaagaatgtgatagatgaaattaagaaaatcatggagaaaaatcctat |
5878634 |
T |
|
| Q |
101 |
gctagatggaaagttgaaattccctgccattgaaagtcagaggctaatgcgtcttctaagtgaaaggtttcacacttattttcttaacttgtcgtattac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5878633 |
gctagatggaaagttgaaattccctgccattgaaagtcagaggctaatgcgtcttctaagtgaaaggtttcacacttattttcttaacttgtcgtattac |
5878534 |
T |
|
| Q |
201 |
atgcaatgctccatattttctt |
222 |
Q |
| |
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|||||||||||||||||||||| |
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|
| T |
5878533 |
atgcaatgctccatattttctt |
5878512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 5874841 - 5874619
Alignment:
| Q |
1 |
tgattagggatcatccattactttcaacatatcaagatgcaaattgggggagaaagaatgtgatagatgaaattaagaatatcatagagaaaaatcctat |
100 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||| |||||||||||| |
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| T |
5874841 |
tgattagggatcattcattactttcaacatatcaagatgcaaattctgggagaaagaatgtgatggatgaaattaagaaagtcataaagaaaaatcctaa |
5874742 |
T |
|
| Q |
101 |
gctagatggaaagttgaaattccctgccattgaaagtcagaggctaatgcgtcttctaagtgaaaggtttcacacttattttcttaacttgtcgtattac |
200 |
Q |
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|||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| | | |
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| T |
5874741 |
attagatggaaaattgaatttccctgccattgaaagtcagaggctaaggcgtcttctaagtgaaaggtttcacacttattttcttaacttatcgtaatgc |
5874642 |
T |
|
| Q |
201 |
atgcaatgctccatattttcttt |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
5874641 |
atgcaatgctccatattttcttt |
5874619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 2659296 - 2659482
Alignment:
| Q |
1 |
tgattagggatcatccattactttcaacatatcaagatgcaaattgggggagaaagaatgtgatagatgaaattaagaatatcatagagaaaaatcctat |
100 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||||||||||| || ||||||| |||||| ||||||||||| | ||||||||| || ||||||| |
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| T |
2659296 |
tgattagggaacatgaattactttcaacatatcaagatgcaatttcttcaagaaagattgtgatgaatgaaattaaggaaatcatagagcaacatcctat |
2659395 |
T |
|
| Q |
101 |
gctagatggaaagttgaaattccctgccattgaaagtcagaggctaatgcgtcttctaagtgaaaggtttcacacttattttcttaa |
187 |
Q |
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| T |
2659396 |
gctcaaaggaaaattgaaatttcctgatattgattgtcagaggctaaagcatcttctaaatgcaaggttccacacttacttccttaa |
2659482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 20431214 - 20431006
Alignment:
| Q |
1 |
tgattagggatcatccattactttcaacatatcaagatgcaaattgggggagaaagaatgtgatagatgaaattaagaatatcatagagaaaaatcctat |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||| ||||||||||| |||||||| |
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| T |
20431214 |
tgattagggaacatccattactttcaacatatcaagatgcaaattctgggtgaaagaatgtgatggatgaaattaagaaaatcatagagaagaatcctat |
20431115 |
T |
|
| Q |
101 |
gctagatggaaagttgaaattccctgccattgaaagtcagaggctaatgcgtcttctaagtgaaaggtttcacacttattttcttaacttgtcgtattac |
200 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||| || ||||| || |
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| T |
20431114 |
tttagatggaaaattgcaattccctgccattgaaagtcagaggttaaggcatcttctaagtgaaaggtttcacacttattttcttaaattatcgtaataa |
20431015 |
T |
|
| Q |
201 |
atgcaatgc |
209 |
Q |
| |
|
||||||||| |
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|
| T |
20431014 |
atgcaatgc |
20431006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 20430772 - 20430952
Alignment:
| Q |
1 |
tgattagggatcatccattactttcaacatatcaagatgcaaattgggggagaaagaatgtgatagatgaaattaagaatatcatagagaaaaatcctat |
100 |
Q |
| |
|
|||||||||| || ||||||||||||||||||||||||| ||||| |||||| |||||||||| |||||||||||||| |||||| ||||||||||||| |
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| T |
20430772 |
tgattagggaccacccattactttcaacatatcaagatgaaaattctgggagatagaatgtgattgatgaaattaagaaaatcatatagaaaaatcctat |
20430871 |
T |
|
| Q |
101 |
gctagatggaaagttgaaattccctgccattgaaagtcagaggctaatgcgtcttctaagtgaaaggtttcacacttattt |
181 |
Q |
| |
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| |||||||||| ||| | |||||||||| ||||||||||| || || | |||| ||| |||||||||||||||||||||| |
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|
| T |
20430872 |
gttagatggaaaattgcagttccctgccagtgaaagtcagaagcaaaggtgtctactaggtgaaaggtttcacacttattt |
20430952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 87 - 190
Target Start/End: Complemental strand, 11430621 - 11430518
Alignment:
| Q |
87 |
gagaaaaatcctatgctagatggaaagttgaaattccctgccattgaaagtcagaggctaatgcgtcttctaagtgaaaggtttcacacttattttctta |
186 |
Q |
| |
|
|||||| |||||||| |||||||||| ||||||||| | ||||| || ||||| |||| || |||||||| ||||||||||||||||| |||||||| |
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| T |
11430621 |
gagaaacatcctatgttagatggaaaactgaaattccattccattaaagagcagagcctaaggcatcttctaaatgaaaggtttcacacttgttttctta |
11430522 |
T |
|
| Q |
187 |
actt |
190 |
Q |
| |
|
|||| |
|
|
| T |
11430521 |
actt |
11430518 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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