View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6600_low_3 (Length: 404)
Name: NF6600_low_3
Description: NF6600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6600_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 20 - 394
Target Start/End: Complemental strand, 38877978 - 38877604
Alignment:
| Q |
20 |
cttttctcacccaaaaatccaaaatctacatcaactcacccgctgcacgagatttggtcgctgttagttcagatttcggtcagtaaactattattgtcca |
119 |
Q |
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| T |
38877978 |
cttttctcacccaaaaatccaaaatctacatcaactcacccgctgcacgagatttggtcactgttagttcagatttcggtcagtaaactattattgtcca |
38877879 |
T |
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| Q |
120 |
cccttaattgaatttgtaccaatcttaataatagtgtcctctgaaggtcgtataatatgtagtattaacttatagaaatttagattccatcaatagattt |
219 |
Q |
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| T |
38877878 |
cccttaattgaatttgtaccaatcttaataatagtgtcctctgaaggtcgtataatatgtagtattaacttatagaaatttagattccatcaatagattt |
38877779 |
T |
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| Q |
220 |
cagaacttctcctaggactagtccccattgagtccaatgagtgccaccctgcatttgaaaaacaaatgaagttaatatgtaatagtgaatcatacccata |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38877778 |
cagaacttctcctaggactagtccccattgagtccaatgagtgccaccctgcatttgaaaaacaaatgaagttaatatgtaatagtgaatcatacccata |
38877679 |
T |
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| Q |
320 |
tgtagtatattgttgttcgatgcaaaaccaacatgcctggcaaaatacagcaaatggctctcgatgatgtccatc |
394 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | || ||||||| |
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| T |
38877678 |
tgtagtatattgttgtttgatgcaaaaccaacatgcctggcaaaatacagcaaatggctctctaagaggtccatc |
38877604 |
T |
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