View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6600_low_5 (Length: 335)
Name: NF6600_low_5
Description: NF6600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6600_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 19 - 317
Target Start/End: Original strand, 43843343 - 43843641
Alignment:
| Q |
19 |
atgtgtaattattcgtagaaatgaattaacattatatgagaattttataaaattatcaacaaaaaatgtataatttttactcaaactctataaaatttct |
118 |
Q |
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| T |
43843343 |
atgtgcaattattcgcagaaatgaattaacgttatatgagaaatctataaaattatcaacaaaaaatgtgcaatttttatccaaactctataaaatttct |
43843442 |
T |
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| Q |
119 |
gacttcgctactgaacggagggagtatatcatattcaagttgaagttttaagaggattttcgataagttcatgattgttgatcgttatacatcatcaggt |
218 |
Q |
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| T |
43843443 |
ggcttcgctaccggacggagggaatatatcatattcaagttgaagtttcaaaaggattttcgataagttcatgattgttgatcgttacacatcatcaagt |
43843542 |
T |
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| Q |
219 |
cgtgtgatacgtcatatctttttcaagtcaannnnnnngagaaatagaccaaatctaggtgattttaaaatggagtaaccaatttccccaagtgggcaa |
317 |
Q |
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| T |
43843543 |
tgtgtgatacgtcatatctttttcaagttatttctttttagaaatagaccaaatctaggtgattttaaaatggagtaaccaatttccccaagtgggcaa |
43843641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 122
Target Start/End: Original strand, 38239618 - 38239721
Alignment:
| Q |
19 |
atgtgtaattattcgtagaaatgaattaacattatatgagaattttataaaattatcaacaaaaaatgtataatttttactcaaactctataaaatttct |
118 |
Q |
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||||| ||||||||| | |||||| ||||||||| |||||| | |||||||||||| ||||||||||| |||||||||| || ||||||||||||| | |
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| T |
38239618 |
atgtgcaattattcgcaagaatgaagtaacattatgtgagaagtctataaaattatccacaaaaaatgtgtaatttttacccaggctctataaaattttt |
38239717 |
T |
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| Q |
119 |
gact |
122 |
Q |
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|||| |
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| T |
38239718 |
gact |
38239721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 122
Target Start/End: Original strand, 9738545 - 9738645
Alignment:
| Q |
22 |
tgtaattattcgtagaaatgaattaacattatatgagaattttataaaattatcaacaaaaaatgtataatttttactcaaactctataaaatttctgac |
121 |
Q |
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||||||||| ||||| || ||| ||||||||||| || ||||||||||||| || ||||| || ||||||||| |||| | ||||||||||||||| |
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| T |
9738545 |
tgtaattatccgtaggaaggaagtaacattatattgaaagtttataaaattattcgcagaaaatatacaatttttacccaaattttataaaatttctgac |
9738644 |
T |
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| Q |
122 |
t |
122 |
Q |
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| T |
9738645 |
t |
9738645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 124
Target Start/End: Original strand, 43927349 - 43927422
Alignment:
| Q |
49 |
attatatgagaattttataaaattatcaacaaaaaatgtataatttttactcaaactctataaaatttctgacttc |
124 |
Q |
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|||||||| ||| |||||||||||||| |||||||| | |||||||| || ||||||||||||||||| |||| |
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| T |
43927349 |
attatatgggaagtttataaaattatccgcaaaaaatatgcaattttta--cagactctataaaatttctggcttc |
43927422 |
T |
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