View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6603_high_3 (Length: 403)
Name: NF6603_high_3
Description: NF6603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6603_high_3 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 166 - 403
Target Start/End: Complemental strand, 38498459 - 38498222
Alignment:
| Q |
166 |
ccggtgtgtgtttgattctacagtgagaaaaattgatttggaattatatgattttgtaaacttgattctggccgaaacgagagttgaaagtaaagtgatt |
265 |
Q |
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| T |
38498459 |
ccggtgtgtgtttgattctacagtgagaaaaattgatttggaattatatgattttgtaaacttgattctggccgaaacgagagttgaaagtaaagtgatt |
38498360 |
T |
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| Q |
266 |
tatatttgaatatataaaagtgagttgaacnnnnnnnttgagtctggaaatcaattttagaatcaaagctcaaaatttagcttctaggtagaatcaatta |
365 |
Q |
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| T |
38498359 |
tatatttgaatatataaaagtgagttgaacaaaaaaattgagtctggtaatcaattttagaatcaaagctcaaaatttagcttctaggtagaatcaatta |
38498260 |
T |
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| Q |
366 |
tggaggcaaaataaattatactcaagagcagccaaacc |
403 |
Q |
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| T |
38498259 |
tggaggcaaaataaattatactcaagagcagccaaacc |
38498222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 8 - 82
Target Start/End: Complemental strand, 38498617 - 38498543
Alignment:
| Q |
8 |
acatcatcacttccaaaggtccctactccaataagaactccggtgttgatgcacgcgatctcaagtaatcacctg |
82 |
Q |
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| T |
38498617 |
acatcatcacttccaaaggtccctactccaataagaactccggtgttgatgcacgcgatctcaagtaatcacctg |
38498543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 387
Target Start/End: Original strand, 39733713 - 39733747
Alignment:
| Q |
353 |
gtagaatcaattatggaggcaaaataaattatact |
387 |
Q |
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| T |
39733713 |
gtagaatcaattatggaggcagaataaattatact |
39733747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 313 - 390
Target Start/End: Complemental strand, 31453433 - 31453355
Alignment:
| Q |
313 |
aaatcaattttagaatcaaa--gctcaaaatttagcttctaggtagaatcaattatggaggcaaaataaattatactcaa |
390 |
Q |
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| T |
31453433 |
aaatcaatttcagaatcaaaaggaacaaattttagcttcaag-tagaatcaattatagaggcaaaataaattctactcaa |
31453355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 336 - 382
Target Start/End: Complemental strand, 5977206 - 5977160
Alignment:
| Q |
336 |
caaaatttagcttctaggtagaatcaattatggaggcaaaataaatt |
382 |
Q |
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|||| ||||||||| || ||||||||||||||||||||||| ||||| |
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| T |
5977206 |
caaattttagcttcaagttagaatcaattatggaggcaaaacaaatt |
5977160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 354 - 395
Target Start/End: Complemental strand, 44505934 - 44505893
Alignment:
| Q |
354 |
tagaatcaattatggaggcaaaataaattatactcaagagca |
395 |
Q |
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| T |
44505934 |
tagaaacaattatggaggcaaaatcaattttactcaagagca |
44505893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 353 - 402
Target Start/End: Original strand, 5489922 - 5489971
Alignment:
| Q |
353 |
gtagaatcaattatggaggcaaaataaattatactcaagagcagccaaac |
402 |
Q |
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| T |
5489922 |
gtagaatcaattttggaggcaaaattaattctactcaggagcaaccaaac |
5489971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 402
Target Start/End: Original strand, 2234291 - 2234339
Alignment:
| Q |
354 |
tagaatcaattatggaggcaaaataaattatactcaagagcagccaaac |
402 |
Q |
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| T |
2234291 |
tagaatcaattcaggaggcaaaatcaattctactcaagagcaaccaaac |
2234339 |
T |
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