View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6603_low_2 (Length: 640)
Name: NF6603_low_2
Description: NF6603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6603_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 595; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 595; E-Value: 0
Query Start/End: Original strand, 11 - 629
Target Start/End: Complemental strand, 32667354 - 32666736
Alignment:
| Q |
11 |
catcatcatagcaggaatgggacttttcactgactcttatgacctcttctccatcacactcatcacaaagatgctaggaagaatatactactctgaccac |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
32667354 |
catcatcatagcaggaatgggacttttcactgactcttatgaccttttttccatcacactcatcacaaagatgctaggaagaatatactactccgaccac |
32667255 |
T |
|
| Q |
111 |
caagaaatccgtcaagtcaacccggtcgtggtctcagctcttgtctccgtcgcactcctaggaaccgccttcggtcagctcctattcggacgcctcggag |
210 |
Q |
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| T |
32667254 |
caagaaatccgtcaagtcaacccggtcgtggtctcagcccttgtctccgttgcactcctaggaaccgccttcggtcagctcctattcggacgcctcggag |
32667155 |
T |
|
| Q |
211 |
acctaaaaggccggcgccacgtctacggtatcgccttattattgatgctaacaagctctctagcttctggcttctccatctgtacaacaaagagagcttg |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32667154 |
acctaaaaggccggcgccacgtctacggtatcgccttattattgatgctaacaagctctctagcttctggcttctccatctgtacaacaaagagagcttg |
32667055 |
T |
|
| Q |
311 |
tgttttactatctcttggtttctttagattcttcttagggcttggaattggtggtgattatcctttatcttctaccattatgtctgagtttgcaaataaa |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
32667054 |
tgttttactatctcttggtttctttagattcttcttagggcttggaattggtggtgattatcctttatcttctaccattatgtctgagtttgctaataaa |
32666955 |
T |
|
| Q |
411 |
aggacaagaggttcttttatagctgcggttttttctatgcaagggtttggtatattggctagtgcaactgttactatggtggtttgcttggtatttcgca |
510 |
Q |
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| T |
32666954 |
aggacaagaggttcttttatagctgcggttttttctatgcaagggtttggtatattggctagtgcaactgttactatggtggtttgcttggtatttcgca |
32666855 |
T |
|
| Q |
511 |
gcggttcgaagccggcaacggcttttgatgtgccgccggaggctgacgttgcatggaggttgatattgatgattggttcagttccagctgcattgactta |
610 |
Q |
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| T |
32666854 |
gcggttcgaagccggcaacggcttttgatgtgccgccggaggctgacgttgcatggaggttgatattgatgattggttcagttccagctgcattgactta |
32666755 |
T |
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| Q |
611 |
ttattggcgtatgatgatg |
629 |
Q |
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||||||||||||||||||| |
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| T |
32666754 |
ttattggcgtatgatgatg |
32666736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 322 - 470
Target Start/End: Complemental strand, 37315913 - 37315765
Alignment:
| Q |
322 |
ctcttggtttctttagattcttcttagggcttggaattggtggtgattatcctttatcttctaccattatgtctgagtttgcaaataaaaggacaagagg |
421 |
Q |
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||||| ||||||||||||||| |||| |||| |||||||||||||| ||| | || |||| ||||||||||| | ||| || |||| ||| | || |
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| T |
37315913 |
ctctttgtttctttagattctggctaggttttggtattggtggtgattaccctctttcagctactattatgtctgaatatgccaacaaaaagactcgtgg |
37315814 |
T |
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| Q |
422 |
ttcttttatagctgcggttttttctatgcaagggtttggtatattggct |
470 |
Q |
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| T |
37315813 |
cgcgtttatagcttcggtttttgctatgcaagggtttggaattttggct |
37315765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 352 - 460
Target Start/End: Original strand, 33109294 - 33109402
Alignment:
| Q |
352 |
ttggaattggtggtgattatcctttatcttctaccattatgtctgagtttgcaaataaaaggacaagaggttcttttatagctgcggttttttctatgca |
451 |
Q |
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||||||||||||||||||| ||| | ||| |||| ||||||||||||| ||| || || | ||| |||| ||||||| ||||| || ||| ||||||| |
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| T |
33109294 |
ttggaattggtggtgattaccctctttctgctacaattatgtctgagtatgcgaacaagaagacgcgaggagcttttatcgctgcagtgtttgctatgca |
33109393 |
T |
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| Q |
452 |
agggtttgg |
460 |
Q |
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||| ||||| |
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| T |
33109394 |
aggatttgg |
33109402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 352 - 460
Target Start/End: Original strand, 33115329 - 33115437
Alignment:
| Q |
352 |
ttggaattggtggtgattatcctttatcttctaccattatgtctgagtttgcaaataaaaggacaagaggttcttttatagctgcggttttttctatgca |
451 |
Q |
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|||||||||| |||||||| ||| | || |||| || |||||||||| ||||||||||| ||| | ||| | |||||||| || ||||| ||||||| |
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| T |
33115329 |
ttggaattggcggtgattaccctctttcagctactatcatgtctgagtatgcaaataaaaagactcgtggtgcatttatagcggctgttttcgctatgca |
33115428 |
T |
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| Q |
452 |
agggtttgg |
460 |
Q |
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||| ||||| |
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| T |
33115429 |
aggttttgg |
33115437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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