View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6603_low_3 (Length: 431)
Name: NF6603_low_3
Description: NF6603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6603_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 18 - 273
Target Start/End: Complemental strand, 23150182 - 23149920
Alignment:
| Q |
18 |
tttgcttccaaggactaaggcttcagagtgtttgcgagta-------cctcaatcttcaaccttgatagatcgttgttcgacgtcaaccatcacttctta |
110 |
Q |
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| T |
23150182 |
tttgcttccaaggacttggacttcagagtgcttgcaagtatccccaccctcaatcttcaaccttgatagatcgttgttcgacgtcaaccatcacttctta |
23150083 |
T |
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| Q |
111 |
tgacctcgaattagttccgccgtatgtaggaactagtttcccattaatcttaatttccactaaagatcaaaacctccttaaaattcaaaacacttcaaat |
210 |
Q |
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| T |
23150082 |
tgacctcgaattagttcctccgtatgtgggaactagtttcccattaaacttaatttccactaaagatcaaaacctccttaaaattcaaaacacttcaaat |
23149983 |
T |
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| Q |
211 |
ggccaaacaacaacaactttatcctaataacattgttctccattctacatccgacgatgttaa |
273 |
Q |
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| T |
23149982 |
ggccaaacaacaacaactttatcccaataacattgttctccattctacatccgacgatgttaa |
23149920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 282 - 421
Target Start/End: Complemental strand, 23149857 - 23149718
Alignment:
| Q |
282 |
caaggataaaaatatattatgtgaactctggttcaagcagtgcaaaactaaaactagataattcaagaacatgcgattacaacacatacacacacaatct |
381 |
Q |
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||||||||||||||||||||| |||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
23149857 |
caaggataaaaatatattatgggaaccctcgttcaaggagtgcaaaactaaaactagataattcaagaacatgcgattacaacacatacacacacaacct |
23149758 |
T |
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| Q |
382 |
ctggaattgcatggatatttgcacgggtataagcattcat |
421 |
Q |
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| T |
23149757 |
ttggaattgcatggatatttgcacgggtataagcattcat |
23149718 |
T |
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