View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6603_low_6 (Length: 374)
Name: NF6603_low_6
Description: NF6603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6603_low_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 19 - 363
Target Start/End: Original strand, 40167330 - 40167673
Alignment:
| Q |
19 |
gtagagtaccatatagattgtcatatgtggtaccgtttttcattccatcgggcaaattgttctaaaattcatgatgcccatcacatgctcctcctctatc |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
40167330 |
gtagagtaccatatagattgtcatatgtggtgccgtttttcattccgtcaggcaaattgttctaaaatccatgatgcccatcacatgctcctcctctatc |
40167429 |
T |
|
| Q |
119 |
agaaactccacatttgttggggctagacgattctacctcgactaaagctactagtttaagatgagataccctttgaccaaggaacataaacttgtatgtg |
218 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40167430 |
agaacctccacatttgttggggctagacgattctacctcgactaaagctactagtttaggatgagataccctttgaccaaggaacataaacttgtatgtg |
40167529 |
T |
|
| Q |
219 |
atgccaacatatctccaaaaataaaccctgcacatcctcgtgtataacatgcnnnnnnnnnnntcttgaaatgtgttgtctatctggaatacattaatat |
318 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |
|
|
| T |
40167530 |
atgccaacatatctccaaaaataaaccccgcacatcctcgtgtataacatgc-aacaaaaaaatcttgaaatgtgttgtctgtctggaatacattaatat |
40167628 |
T |
|
| Q |
319 |
ctggcatggatgaaggatgcatcagaatgatctgagtacattcat |
363 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
40167629 |
ctggcatggatgaaggatgcatcagaatgatcttaatacattcat |
40167673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University