View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6603_low_7 (Length: 301)
Name: NF6603_low_7
Description: NF6603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6603_low_7 |
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| [»] chr3 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 9 - 301
Target Start/End: Original strand, 45836934 - 45837226
Alignment:
| Q |
9 |
gattatactgaacaaggatctactgtatttgatcctcctcatgaatctcaaaatttttcacgcgtgtcccctacatttaactttggagctcatgatctag |
108 |
Q |
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| T |
45836934 |
gattatactgaacaaggatctactgtatttgatcctcctcatgtatctcaaaatttttcacgcgtgtcccctacatttaactttggagctcatgatctag |
45837033 |
T |
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| Q |
109 |
cgtggatattaagattctggagcttgaactacaatcctccacataagctgcggagcttctcccgttggccgcgttttggagtttcgagagctgccaggtc |
208 |
Q |
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| T |
45837034 |
cgtggatattaagattctggagcttgaactacaatcctccacataagctgcggagcttctcccgttggccgcgttttggagtttcgagagctgccaggtc |
45837133 |
T |
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| Q |
209 |
aggcaatctttcactagataaagtgatgactgaattcatgcttcgtctagatgccaccccagcctgtataaagaacatgcctttagatgatga |
301 |
Q |
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| T |
45837134 |
aggcaatctttcactagataaagtgatgactgaattcatgcttcgtctagatgccaccccagcctgtataaagaacatgcctttagatgatga |
45837226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 100 - 301
Target Start/End: Complemental strand, 28126365 - 28126164
Alignment:
| Q |
100 |
atgatctagcgtggatattaagattctggagcttgaactacaatcctccacataagctgcggagcttctcccgttggccgcgttttggagtttcgagagc |
199 |
Q |
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| T |
28126365 |
atgatctagcatggattataagattctggaacttgaactttcttcctccacataaactgcgctccttctcacgatggcctcgttttggagttccaagact |
28126266 |
T |
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| Q |
200 |
tgccaggtcaggcaatctttcactagataaagtgatgactgaattcatgcttcgtctagatgccaccccagcctgtataaagaacatgcctttagatgat |
299 |
Q |
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| T |
28126265 |
tatcagatcaggcaatctttcacttgatagagtgatgaccgaatttatgttgcgtcttgattgcacaccaatctgtattaagaacatgcctttacatgat |
28126166 |
T |
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| Q |
300 |
ga |
301 |
Q |
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|| |
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| T |
28126165 |
ga |
28126164 |
T |
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