View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6603_low_8 (Length: 243)

Name: NF6603_low_8
Description: NF6603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6603_low_8
NF6603_low_8
[»] chr8 (7 HSPs)
chr8 (1-236)||(14090421-14090658)
chr8 (110-236)||(42277656-42277784)
chr8 (120-236)||(36831786-36831904)
chr8 (98-236)||(8269046-8269186)
chr8 (1-175)||(5339517-5339691)
chr8 (1-46)||(43095385-43095430)
chr8 (110-211)||(27470691-27470794)
[»] chr7 (9 HSPs)
chr7 (5-236)||(20216370-20216603)
chr7 (1-236)||(47247521-47247758)
chr7 (105-236)||(31188241-31188374)
chr7 (98-236)||(28244349-28244489)
chr7 (1-236)||(30712882-30713119)
chr7 (1-236)||(39973272-39973509)
chr7 (120-236)||(25783765-25783883)
chr7 (1-236)||(46271765-46272001)
chr7 (123-236)||(20219330-20219445)
[»] chr6 (2 HSPs)
chr6 (1-177)||(13681932-13682108)
chr6 (98-236)||(25062492-25062632)
[»] chr1 (6 HSPs)
chr1 (1-236)||(43628340-43628577)
chr1 (1-236)||(50543428-50543665)
chr1 (110-236)||(42097083-42097211)
chr1 (120-236)||(28793669-28793787)
chr1 (110-236)||(35065567-35065694)
chr1 (110-236)||(10885640-10885768)
[»] chr5 (5 HSPs)
chr5 (1-236)||(6658539-6658774)
chr5 (105-236)||(43453183-43453316)
chr5 (120-233)||(20828371-20828486)
chr5 (110-236)||(10014911-10015039)
chr5 (1-236)||(38364744-38364981)
[»] scaffold0009 (1 HSPs)
scaffold0009 (110-236)||(235319-235447)
[»] chr3 (5 HSPs)
chr3 (120-236)||(39348035-39348153)
chr3 (110-236)||(43722329-43722457)
chr3 (110-230)||(8626628-8626750)
chr3 (162-236)||(51897498-51897574)
chr3 (110-236)||(42722909-42723037)
[»] chr2 (2 HSPs)
chr2 (1-236)||(3408450-3408687)
chr2 (109-236)||(21639161-21639287)
[»] chr4 (2 HSPs)
chr4 (110-236)||(30844940-30845068)
chr4 (103-236)||(901535-901670)


Alignment Details
Target: chr8 (Bit Score: 171; Significance: 6e-92; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 14090658 - 14090421
Alignment:
Q  1 taaaatgcatcaataatggaaagaagatagacgcgatgcaagataaacagaccatctctatcatggatacacggtggtggcgtgacaaaattcagcgcac 100  Q
    ||||||||||||| || |||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||| ||| ||||||||    
T  14090658 taaaatgcatcaacaacggaaagaagatagacgcgatacaagataaacagaccacctctatcatggatgcacggtggtggcgtgacagaatgcagcgcac 14090559  T
Q  101 cagtctttcttggcttcatgataccagctacagcctgattgaccacaatctgatttgtgcatttgtcgagaggtg--acgaggagacttcgaatttccac 198  Q
    | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||| |||||||    
T  14090558 cggtctttcttggcttcatgataccagctacaacctgattgaccacaatctgatttgtgcatttgtggagaggtgacacgaggagacttcgagtttccac 14090459  T
Q  199 cttccgttaggggggatgacagtaacacttgatgatgt 236  Q
    ||| | ||||||||||||||||| ||||||||||||||    
T  14090458 ctttcattaggggggatgacagtgacacttgatgatgt 14090421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 110 - 236
Target Start/End: Original strand, 42277656 - 42277784
Alignment:
Q  110 ttggcttcatgataccagctacagcctgattgaccacaatctgatttgtgcatttgtcgagaggtg--acgaggagacttcgaatttccaccttccgtta 207  Q
    |||||| || ||||||| ||||||| ||||||||||   ||| |||||||| || || ||||||||  ||||||||||||| || ||||||||||||||     
T  42277656 ttggctccaggataccaactacagcatgattgaccatggtctaatttgtgccttcgttgagaggtggcacgaggagacttccaacttccaccttccgttt 42277755  T
Q  208 ggggggatgacagtaacacttgatgatgt 236  Q
    |||| ||||||||| ||||||||||||||    
T  42277756 ggggagatgacagtcacacttgatgatgt 42277784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 120 - 236
Target Start/End: Original strand, 36831786 - 36831904
Alignment:
Q  120 gataccagctacagcctgattgaccacaatctgatttgtgcatttgtcgagaggtg--acgaggagacttcgaatttccaccttccgttaggggggatga 217  Q
    ||||||||||||||| ||||||||||   | |||| ||||| ||||| ||||||||  ||||||||||||| |  |||||||||||||| |||| |||||    
T  36831786 gataccagctacagcatgattgaccatggtttgatctgtgcctttgtggagaggtggcacgaggagacttccagcttccaccttccgtttggggagatga 36831885  T
Q  218 cagtaacacttgatgatgt 236  Q
    |||| ||||||||||||||    
T  36831886 cagtcacacttgatgatgt 36831904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 98 - 236
Target Start/End: Original strand, 8269046 - 8269186
Alignment:
Q  98 caccagtctttcttggcttcatgataccagctacagcctgattgaccacaatctgatttgtgcatttgtcgagaggtg--acgaggagacttcgaatttc 195  Q
    |||| |||||||||||||| | ||||||||||||| || |||||||||| | ||||||| | ||||||  ||||||||  |||||||||| || |  |||    
T  8269046 caccggtctttcttggcttaaggataccagctacaaccggattgaccacgacctgatttctacatttgcggagaggtggcacgaggagacatcaagcttc 8269145  T
Q  196 caccttccgttaggggggatgacagtaacacttgatgatgt 236  Q
    || ||||| ||  ||| ||||||||| |||||| |||||||    
T  8269146 catcttccatttcgggagatgacagtgacacttaatgatgt 8269186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 5339517 - 5339691
Alignment:
Q  1 taaaatgcatcaataatggaaagaagatagacgcgatgcaagataaacagaccatctctatcatggatacacggtggtggcgtgacaaaattcagcgcac 100  Q
    ||||||||||||| || |||||||||||||| |||||||| |||||  | ||||   ||||||||| | |||| ||||||    ||||| | ||| ||||    
T  5339517 taaaatgcatcaacaacggaaagaagatagaagcgatgcatgataatgacaccagacctatcatggctgcacgatggtgggagaacaaattacagggcac 5339616  T
Q  101 cagtctttcttggcttcatgataccagctacagcctgattgaccacaatctgatttgtgcatttgtcgagaggtg 175  Q
    | | |||  |||||| || || |||||||||| | ||||||||||   |||||||||||| ||||| ||||||||    
T  5339617 cggccttggttggctccaggacaccagctacaacatgattgaccatggtctgatttgtgcctttgtggagaggtg 5339691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 43095385 - 43095430
Alignment:
Q  1 taaaatgcatcaataatggaaagaagatagacgcgatgcaagataa 46  Q
    ||||||||||||| || |||||||||||||| |||||||| |||||    
T  43095385 taaaatgcatcaacaacggaaagaagatagaagcgatgcatgataa 43095430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 211
Target Start/End: Complemental strand, 27470794 - 27470691
Alignment:
Q  110 ttggcttcatgataccagctacagcctgattgaccacaatctgatttgtgcatttgtcgagaggtgac--gaggagacttcgaatttccaccttccgtta 207  Q
    |||||| || ||||||||||||| | ||||||||||   ||||   ||||| ||||| ||||||||||  ||||||||||| |  ||||||||||||||     
T  27470794 ttggctccaggataccagctacaacatgattgaccatggtctggcctgtgcctttgtggagaggtgacacgaggagacttccagcttccaccttccgttt 27470695  T
Q  208 gggg 211  Q
    ||||    
T  27470694 gggg 27470691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 111; Significance: 4e-56; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 5 - 236
Target Start/End: Complemental strand, 20216603 - 20216370
Alignment:
Q  5 atgcatcaataatggaaagaagatagacgcgatgcaagataaacagaccatctctatcatggatacacggtggtggcgtgacaaaattcagcgcaccagt 104  Q
    ||||||||| || ||||||||||||||  ||||||| ||||||||||||| | ||||||||| | || ||||||||||||||| ||| ||| ||||| ||    
T  20216603 atgcatcaacaacggaaagaagatagaaacgatgcatgataaacagaccacccctatcatggttgcatggtggtggcgtgacataatgcagggcacctgt 20216504  T
Q  105 ctttcttggcttcatgataccagctacagcctgattgaccacaatctgatttgtgcatttgtcgagaggtg--acgaggagacttcgaatttccaccttc 202  Q
    |||||||||||||| || |||||||||||| |||||||||||  ||| |||| ||||||||| ||||||||  ||||||||||||||| ||| |||||||    
T  20216503 ctttcttggcttcaggacaccagctacagcttgattgaccacggtctaatttctgcatttgtggagaggtggtacgaggagacttcgagttttcaccttc 20216404  T
Q  203 cgttaggggggatgacagtaacacttgatgatgt 236  Q
    |||| |||| ||||||| | ||||||||||||||    
T  20216403 cgtttggggagatgacaatgacacttgatgatgt 20216370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 47247521 - 47247758
Alignment:
Q  1 taaaatgcatcaataatggaaagaagatagacgcgatgcaagataaacagaccatctctatcatggatacacggtggtggcgtgacaaaattcagcgcac 100  Q
    ||||||||||||| || | |||||||||||| |||||||| |||||  | ||||   ||||||||| | |||||||||||    ||||| | ||| ||||    
T  47247521 taaaatgcatcaacaacgaaaagaagatagaagcgatgcatgataatgacaccagacctatcatggctgcacggtggtgggagaacaaattgcagggcac 47247620  T
Q  101 cagtctttcttggcttcatgataccagctacagcctgattgaccacaatctgatttgtgcatttgtcgagaggtg--acgaggagacttcgaatttccac 198  Q
    ||| |||  |||||| || || |||||||||| | |||||||||| | |||||||||||| ||||| ||||||||  ||||||||||||| |  ||||||    
T  47247621 cagccttggttggctccaggacaccagctacaacatgattgaccatagtctgatttgtgcctttgtggagaggtggcacgaggagacttccagcttccac 47247720  T
Q  199 cttccgttaggggggatgacagtaacacttgatgatgt 236  Q
    ||||| || | || ||||||||| |||||||| |||||    
T  47247721 cttccatttgtggagatgacagtcacacttgacgatgt 47247758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 105 - 236
Target Start/End: Complemental strand, 31188374 - 31188241
Alignment:
Q  105 ctttcttggcttcatgataccagctacagcctgattgaccacaatctgatttgtgcatttgtcgagaggtg--acgaggagacttcgaatttccaccttc 202  Q
    |||| ||||||||| ||||||||||||| | |||||| |||   |||||||||||| ||||| ||||||||  || |||||||||| |  ||||||||||    
T  31188374 ctttgttggcttcaggataccagctacaacatgattggccattgtctgatttgtgcctttgtggagaggtggcacaaggagacttccagcttccaccttc 31188275  T
Q  203 cgttaggggggatgacagtaacacttgatgatgt 236  Q
    |||| |||| ||||||||| ||||||||||||||    
T  31188274 cgtttggggagatgacagtcacacttgatgatgt 31188241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 98 - 236
Target Start/End: Original strand, 28244349 - 28244489
Alignment:
Q  98 caccagtctttcttggcttcatgataccagctacagcctgattgaccacaatctgatttgtgcatttgtcgagaggtg--acgaggagacttcgaatttc 195  Q
    |||| ||||||||| |||||||||||| ||||||| ||  ||||||||| | ||| | | ||||||||   |||||||  |||||||||||||||  |||    
T  28244349 caccggtctttcttagcttcatgatacaagctacaaccaaattgaccacgacctgctatctgcatttgcgcagaggtgtcacgaggagacttcgagcttc 28244448  T
Q  196 caccttccgttaggggggatgacagtaacacttgatgatgt 236  Q
    || |||||||| |||| ||||||||| ||||||||||||||    
T  28244449 catcttccgtttggggagatgacagtgacacttgatgatgt 28244489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 30713119 - 30712882
Alignment:
Q  1 taaaatgcatcaataatggaaagaagatagacgcgatgcaagataaacagaccatctctatcatggatacacggtggtggcgtgacaaaattcagcgcac 100  Q
    ||||||||||||| || |||||||||||||| |||||||| |||||  | ||||   ||||||||| | |||||||||||    ||||| | ||| ||||    
T  30713119 taaaatgcatcaacaacggaaagaagatagaagcgatgcatgataatgacaccaaacctatcatggttgcacggtggtgggagaacaaattgcagtgcac 30713020  T
Q  101 cagtctttcttggcttcatgataccagctacagcctgattgaccacaatctgatttgtgcatttgtcgagaggtg--acgaggagacttcgaatttccac 198  Q
    ||| |||  |||||| || || |||||||||| | ||||||||||   | | |||||||| ||||| || |||||  ||||||||||||| |  ||||||    
T  30713019 cagccttggttggctccaagacaccagctacatcatgattgaccattgtttaatttgtgcctttgtggataggtggcacgaggagacttccagcttccac 30712920  T
Q  199 cttccgttaggggggatgacagtaacacttgatgatgt 236  Q
    |||| |||  ||| | ||||||| |||||||| |||||    
T  30712919 cttcagtttagggaggtgacagtcacacttgacgatgt 30712882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 39973272 - 39973509
Alignment:
Q  1 taaaatgcatcaataatggaaagaagatagacgcgatgcaagataaacagaccatctctatcatggatacacggtggtggcgtgacaaaattcagcgcac 100  Q
    ||||||||||||| || |||||||||||||| || ||||| |||||  | ||||   ||||||||| | |||||||||||    ||||| | ||| ||||    
T  39973272 taaaatgcatcaacaacggaaagaagatagaagcaatgcatgataatgacaccagacctatcatggctgcacggtggtgggagaacaaattgcagggcac 39973371  T
Q  101 cagtctttcttggcttcatgataccagctacagcctgattgaccacaatctgatttgtgcatttgtcgagaggtg--acgaggagacttcgaatttccac 198  Q
    |   |||  ||||||  | || |||||||||| | ||||||||||   |||||||||||  ||||| ||||||||  ||||||||||||| |  ||||||    
T  39973372 cgaccttggttggctcaaggacaccagctacaacatgattgaccatggtctgatttgtgtctttgtggagaggtggtacgaggagacttccagcttccac 39973471  T
Q  199 cttccgttaggggggatgacagtaacacttgatgatgt 236  Q
    |||||||| |||| ||||||| | |||||||| |||||    
T  39973472 cttccgtttggggagatgacaatcacacttgacgatgt 39973509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 120 - 236
Target Start/End: Complemental strand, 25783883 - 25783765
Alignment:
Q  120 gataccagctacagcctgattgaccacaatctgatttgtgcatttgtcgagaggtg--acgaggagacttcgaatttccaccttccgttaggggggatga 217  Q
    ||||||||||||| ||| ||||||||   ||| |||||||| ||||| ||||||||  ||||||||| ||| |  |||||||||| |||  ||| |||||    
T  25783883 gataccagctacaacctcattgaccatcgtcttatttgtgcctttgtggagaggtggcacgaggagaattccagcttccaccttctgtttagggagatga 25783784  T
Q  218 cagtaacacttgatgatgt 236  Q
    |||| ||||||||||||||    
T  25783783 cagtcacacttgatgatgt 25783765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 46272001 - 46271765
Alignment:
Q  1 taaaatgcatcaataatggaaagaagatagacgcgatgcaagataaacagaccatctctatcatggatacacggtggtggcgtgacaaaatt-cagcgca 99  Q
    ||||||||||||| || | |||||||||||| ||||||||  ||||  | ||||   ||||||||| | |||| |||||| | ||  ||||| ||| |||    
T  46272001 taaaatgcatcaacaacgaaaagaagatagaagcgatgcataataatgacaccagacctatcatggttgcacgatggtgg-gagaagaaattgcagggca 46271903  T
Q  100 ccagtctttcttggcttcatgataccagctacagcctgattgaccacaatctgatttgtgcatttgtcgagaggtg--acgaggagacttcgaatttcca 197  Q
    |||| |||  |||||| || || |||||||||| ||||||||||||   |||||||||||| ||||| ||||||||  |||| ||| |||| |  |||||    
T  46271902 ccagccttggttggct-caggacaccagctacaacctgattgaccatggtctgatttgtgcctttgtagagaggtggcacgaagagccttccagcttcca 46271804  T
Q  198 ccttccgttaggggggatgacagtaacacttgatgatgt 236  Q
    |||| |||  |||  ||||||||| |||||||| |||||    
T  46271803 cctttcgtatgggaagatgacagtcacacttgacgatgt 46271765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 236
Target Start/End: Complemental strand, 20219445 - 20219330
Alignment:
Q  123 accagctacagcctgattgaccacaatctgatttgtgcatttgtcgagaggtg--acgaggagacttcgaatttccaccttccgttaggggggatgacag 220  Q
    |||||||||| | ||||||||||   |||||||||||  ||||| ||||||||  || |||||||||| |  |||||||||| ||| |||| |||||||     
T  20219445 accagctacaacatgattgaccatggtctgatttgtgtctttgtggagaggtggcacaaggagacttccagcttccaccttctgtttggggagatgacaa 20219346  T
Q  221 taacacttgatgatgt 236  Q
    | |||||||| |||||    
T  20219345 tcacacttgacgatgt 20219330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 13681932 - 13682108
Alignment:
Q  1 taaaatgcatcaataatggaaagaagatagacgcgatgcaagataaacagaccatctctatcatggatacacggtggtggcgtgacaaaatt-cagcgca 99  Q
    |||||||||||||  |||||||||||||||| |||||  | ||||||||  ||||| ||||||||| | |||||||||| | |||||||||| ||| |||    
T  13681932 taaaatgcatcaacgatggaaagaagatagaagcgatatatgataaacattccatccctatcatggctgcacggtggtgacatgacaaaattgcagggca 13682031  T
Q  100 ccagtctttcttggcttcatgataccagctacagcctgattgaccacaatctgatttgtgcatttgtcgagaggtgac 177  Q
    ||  |||||||||| || | ||||||| |||||| ||||||||||||  |||||||| ||||||||| ||||||||||    
T  13682032 ccgatctttcttgg-tttaggataccaactacagactgattgaccacggtctgatttttgcatttgtggagaggtgac 13682108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 98 - 236
Target Start/End: Complemental strand, 25062632 - 25062492
Alignment:
Q  98 caccagtctttcttggcttcatgataccagctacagcctgattgaccacaatctgatttgtgcatttgtcgagaggtg--acgaggagacttcgaatttc 195  Q
    ||||||||||||||||||||| |||| ||||||| ||| ||||||||||  |||| | | ||||||| | ||||||||  |||||||||||||||  |||    
T  25062632 caccagtctttcttggcttcaggatatcagctactgccagattgaccacggtctgctatctgcatttatggagaggtgacacgaggagacttcgagcttc 25062533  T
Q  196 caccttccgttaggggggatgacagtaacacttgatgatgt 236  Q
    || ||| |||| |||  ||||||||| ||||||||||||||    
T  25062532 catctttcgtttgggaagatgacagtgacacttgatgatgt 25062492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 43628577 - 43628340
Alignment:
Q  1 taaaatgcatcaataatggaaagaagatagacgcgatgcaagataaacagaccatctctatcatggatacacggtggtggcgtgacaaaattcagcgcac 100  Q
    ||||||||||||| || | |||||||||||| |||||||| |||||  | || |   ||||||||| | |||||||||||    ||||| | ||| ||||    
T  43628577 taaaatgcatcaacaacgaaaagaagatagaagcgatgcatgataatgacacaagacctatcatggcttcacggtggtgggagaacaaattgcagggcac 43628478  T
Q  101 cagtctttcttggcttcatgataccagctacagcctgattgaccacaatctgatttgtgcatttgtcgagaggtg--acgaggagacttcgaatttccac 198  Q
    | | |||  |||||| || || || ||||||| | ||||||||||   |||||||||||| ||||| ||||||||  ||||||||||||| |  ||||||    
T  43628477 cggccttggttggctccaggacactagctacaacatgattgaccatggtctgatttgtgcctttgtggagaggtggcacgaggagacttccaccttccac 43628378  T
Q  199 cttccgttaggggggatgacagtaacacttgatgatgt 236  Q
    |||||||| |||| ||||||||| ||||||||||||||    
T  43628377 cttccgtttggggagatgacagtcacacttgatgatgt 43628340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 50543428 - 50543665
Alignment:
Q  1 taaaatgcatcaataatggaaagaagatagacgcgatgcaagataaacagaccatctctatcatggatacacggtggtggcgtgacaaaattcagcgcac 100  Q
    ||||||||||||| || |||||||||||||| ||||||||  ||||  | ||||   ||||||||| | |||||||||||    ||||| | ||| ||||    
T  50543428 taaaatgcatcaacaacggaaagaagatagaagcgatgcatcataatgacaccagacctatcatggctgcacggtggtgggagaacaaattgcagggcac 50543527  T
Q  101 cagtctttcttggcttcatgataccagctacagcctgattgaccacaatctgatttgtgcatttgtcgagaggtg--acgaggagacttcgaatttccac 198  Q
    | | |||  |||||| ||  | |||||||||| | ||||||||||   |||||||||||| ||||| ||||||||  ||||||||||||| |  ||||||    
T  50543528 cggccttggttggctccagaacaccagctacaacatgattgaccatggtctgatttgtgcctttgtggagaggtggcacgaggagacttccagcttccac 50543627  T
Q  199 cttccgttaggggggatgacagtaacacttgatgatgt 236  Q
    |||||||| |||| ||||||||| |||||||| |||||    
T  50543628 cttccgtttggggagatgacagtcacacttgacgatgt 50543665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 110 - 236
Target Start/End: Complemental strand, 42097211 - 42097083
Alignment:
Q  110 ttggcttcatgataccagctacagcctgattgaccacaatctgatttgtgcatttgtcgagaggtgac--gaggagacttcgaatttccaccttccgtta 207  Q
    |||||| || ||||||||||||| | ||||||||||   |||||| ||||| |||||  |||||||||  ||||||||||| |  ||||||||||||||     
T  42097211 ttggctccaggataccagctacaacatgattgaccatggtctgatctgtgcctttgtgaagaggtgacacgaggagacttccagcttccaccttccgttt 42097112  T
Q  208 ggggggatgacagtaacacttgatgatgt 236  Q
     ||| ||||||||| ||||||||||||||    
T  42097111 agggagatgacagtcacacttgatgatgt 42097083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 120 - 236
Target Start/End: Complemental strand, 28793787 - 28793669
Alignment:
Q  120 gataccagctacagcctgattgaccacaatctgatttgtgcatttgtcgagaggtg--acgaggagacttcgaatttccaccttccgttaggggggatga 217  Q
    ||||||||||||| | ||||||||||   |||||| |||||  ||||  |||||||  ||||||||||||| |  ||||||||||| || |||| |||||    
T  28793787 gataccagctacaacatgattgaccatggtctgatatgtgccattgtgtagaggtggcacgaggagacttccagcttccaccttccatttggggagatga 28793688  T
Q  218 cagtaacacttgatgatgt 236  Q
    |||| ||||||||||||||    
T  28793687 cagtcacacttgatgatgt 28793669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 110 - 236
Target Start/End: Original strand, 35065567 - 35065694
Alignment:
Q  110 ttggcttcatgataccagctacagcctgattgaccacaatctgatttgtgcatttgtcgagaggtg--acgaggagacttcgaatttccaccttccgtta 207  Q
    |||||| || ||||||||||||| | ||||||||||   ||| || ||||| ||||| ||||||||  ||||||||||||| || |||||||||| |||     
T  35065567 ttggctccaggataccagctacaacatgattgaccatggtctaatctgtgcctttgtggagaggtggcacgaggagacttccaacttccaccttcggttt 35065666  T
Q  208 ggggggatgacagtaacacttgatgatgt 236  Q
    |||| ||||||| | || |||||||||||    
T  35065667 ggggagatgacaatcac-cttgatgatgt 35065694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 110 - 236
Target Start/End: Original strand, 10885640 - 10885768
Alignment:
Q  110 ttggcttcatgataccagctacagcctgattgaccacaatctgatttgtgcatttgtcgagaggtg--acgaggagacttcgaatttccaccttccgtta 207  Q
    |||||| || ||||||||||||| | ||||||||||  |||| |||| ||| ||||| | ||||||  ||||||||||||| |  ||||| ||||| ||     
T  10885640 ttggctccaggataccagctacatcatgattgaccatgatctaatttatgcctttgtggggaggtggcacgaggagacttccagcttccagcttccattt 10885739  T
Q  208 ggggggatgacagtaacacttgatgatgt 236  Q
    ||||  |||| ||| ||||||||||||||    
T  10885740 ggggaaatgaaagtcacacttgatgatgt 10885768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 6658539 - 6658774
Alignment:
Q  1 taaaatgcatcaataatggaaagaagatagacgcgatgcaagataaacagaccatctctatcatggatacacggtggtggcgtgacaaaattcagcgcac 100  Q
    ||||||||||||| || |||||||||||||| | |||||| ||| |  | ||||   ||||||||| | |||||||||||    ||| | | ||| ||||    
T  6658539 taaaatgcatcaacaacggaaagaagatagaagagatgcatgatgatgacaccagacctatcatggttgcacggtggtgggagaacagattgcagggcac 6658638  T
Q  101 cagtctttcttggcttcatgataccagctacagcctgattgaccacaatctgatttgtgcatttgtcgagaggtgacgaggagacttcgaatttccacct 200  Q
    | | |||  ||||||  | ||||||||||||| | ||||||||||   |||||| ||||| ||||| |||||||| | |||||||||| |  ||||||||    
T  6658639 cggccttggttggctctaggataccagctacaacatgattgaccatggtctgatctgtgcctttgtggagaggtggcaaggagacttccagcttccacct 6658738  T
Q  201 tccgttaggggggatgacagtaacacttgatgatgt 236  Q
    || ||| |||| ||||||||| ||||||||||||||    
T  6658739 tctgtttggggagatgacagtcacacttgatgatgt 6658774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 105 - 236
Target Start/End: Complemental strand, 43453316 - 43453183
Alignment:
Q  105 ctttcttggcttcatgataccagctacagcctgattgaccacaatctgatttgtgcatttgtcgagaggtg--acgaggagacttcgaatttccaccttc 202  Q
    |||||||||||||||||||| |||||||  |  |||||||||||  |||||| ||||||||| ||||||||  | ||||||| ||| |  ||||| ||||    
T  43453316 ctttcttggcttcatgatacaagctacattcaaattgaccacaacttgatttctgcatttgtggagaggtggcatgaggagatttcaagcttccatcttc 43453217  T
Q  203 cgttaggggggatgacagtaacacttgatgatgt 236  Q
    |||| |||| ||||||| | ||||||||||||||    
T  43453216 cgtttggggagatgacaatgacacttgatgatgt 43453183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 120 - 233
Target Start/End: Complemental strand, 20828486 - 20828371
Alignment:
Q  120 gataccagctacagcctgattgaccacaatctgatttgtgcatttgtcgagaggtg--acgaggagacttcgaatttccaccttccgttaggggggatga 217  Q
    ||||||||||||||  ||||||||||   |||||| ||||| ||||| ||||||||  ||||||||||||| |  |||||||||||||| |||| | |||    
T  20828486 gataccagctacagtatgattgaccatggtctgatctgtgcctttgtggagaggtggcacgaggagacttccaggttccaccttccgttcggggaggtga 20828387  T
Q  218 cagtaacacttgatga 233  Q
    |||| |||||||||||    
T  20828386 cagtcacacttgatga 20828371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 110 - 236
Target Start/End: Original strand, 10014911 - 10015039
Alignment:
Q  110 ttggcttcatgataccagctacagcctgattgaccacaatctgatttgtgcatttgtcgagaggtg--acgaggagacttcgaatttccaccttccgtta 207  Q
    |||||| || ||||||||||||||| ||||||||||   |||||||||||| ||| | ||||||||  | ||| ||||||  |  || |||||||||||     
T  10014911 ttggctccaggataccagctacagcatgattgaccatggtctgatttgtgcctttatggagaggtggcatgagaagactttcagctttcaccttccgttt 10015010  T
Q  208 ggggggatgacagtaacacttgatgatgt 236  Q
    |||| ||||||||| ||||||||||||||    
T  10015011 ggggagatgacagtcacacttgatgatgt 10015039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 38364744 - 38364981
Alignment:
Q  1 taaaatgcatcaataatggaaagaagatagacgcgatgcaagataaacagaccatctctatcatggatacacggtggtggcgtgacaaaattcagcgcac 100  Q
    ||||||||||||| ||||||||||||||||| | |||||| ||| |  | || |   ||||||||| | |||||||||||    ||| | |  || ||||    
T  38364744 taaaatgcatcaacaatggaaagaagatagaagagatgcatgatgatgacacaagacctatcatggctgcacggtggtgggagaacagattgtagggcac 38364843  T
Q  101 cagtctttcttggcttcatgataccagctacagcctgattgaccacaatctgatttgtgcatttgtcgagaggtgac--gaggagacttcgaatttccac 198  Q
    | | |||  |||||| || ||||||||||||| | ||||||||||   |||||| ||||| ||||| ||| |||| |  ||||||||||| |  ||||||    
T  38364844 cggccttggttggctccaggataccagctacaacatgattgaccatggtctgatatgtgcctttgtggagtggtggcatgaggagacttctagattccac 38364943  T
Q  199 cttccgttaggggggatgacagtaacacttgatgatgt 236  Q
    ||||| || |||| ||||| ||| ||||||||||||||    
T  38364944 cttccatttggggagatgatagtcacacttgatgatgt 38364981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 110 - 236
Target Start/End: Original strand, 235319 - 235447
Alignment:
Q  110 ttggcttcatgataccagctacagcctgattgaccacaatctgatttgtgcatttgtcgagaggtg--acgaggagacttcgaatttccaccttccgtta 207  Q
    |||||| || ||||||||||||| | ||||||||||   |||||||||||| ||||| ||||||||  ||||| ||||||| |  ||||||||||| ||     
T  235319 ttggctccaggataccagctacaacatgattgaccatggtctgatttgtgcctttgtggagaggtggcacgagtagacttccagcttccaccttccattt 235418  T
Q  208 ggggggatgacagtaacacttgatgatgt 236  Q
    |||| ||||||| | ||||||||||||||    
T  235419 ggggagatgacattcacacttgatgatgt 235447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 120 - 236
Target Start/End: Original strand, 39348035 - 39348153
Alignment:
Q  120 gataccagctacagcctgattgaccacaatctgatttgtgcatttgtcgagaggtg--acgaggagacttcgaatttccaccttccgttaggggggatga 217  Q
    ||||||||||||| | ||||||||||   |||||| ||||| ||||| ||||||||  ||||||| ||||| |  |||||||||||||| |||| |||||    
T  39348035 gataccagctacaacatgattgaccatggtctgatctgtgcctttgtggagaggtggcacgaggatacttccagcttccaccttccgtttggggagatga 39348134  T
Q  218 cagtaacacttgatgatgt 236  Q
    || | ||||||||||||||    
T  39348135 caatcacacttgatgatgt 39348153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 110 - 236
Target Start/End: Original strand, 43722329 - 43722457
Alignment:
Q  110 ttggcttcatgataccagctacagcctgattgaccacaatctgatttgtgcatttgtcgagaggtg--acgaggagacttcgaatttccaccttccgtta 207  Q
    |||||| || ||||||||||| ||| ||||||||||   |||||| ||||| ||||| ||||||||  ||||||||||||| |  |||||||||| |||     
T  43722329 ttggctccaggataccagctatagcatgattgaccatggtctgatctgtgcctttgtggagaggtggcacgaggagacttccagcttccaccttctgttt 43722428  T
Q  208 ggggggatgacagtaacacttgatgatgt 236  Q
     ||| |||||||||  |||||||||||||    
T  43722429 agggagatgacagtctcacttgatgatgt 43722457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 110 - 230
Target Start/End: Complemental strand, 8626750 - 8626628
Alignment:
Q  110 ttggcttcatgataccagctacagcctgattgaccacaatctgatttgtgcatttgtcgagaggtg--acgaggagacttcgaatttccaccttccgtta 207  Q
    |||||| || || |||| ||||| | ||||||||||   |||||||||||| ||||| || |||||  ||||||||||||| |  ||||||||||||||     
T  8626750 ttggctccaggacaccatctacaacatgattgaccatggtctgatttgtgcctttgtggataggtggcacgaggagacttccagcttccaccttccgttt 8626651  T
Q  208 ggggggatgacagtaacacttga 230  Q
    |||| ||||||||| ||||||||    
T  8626650 ggggagatgacagtcacacttga 8626628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 236
Target Start/End: Original strand, 51897498 - 51897574
Alignment:
Q  162 tttgtcgagaggtg--acgaggagacttcgaatttccaccttccgttaggggggatgacagtaacacttgatgatgt 236  Q
    ||||| ||||||||  ||||||||||||| |  |||||||||||||| |||| ||||||| | ||||||||||||||    
T  51897498 tttgtggagaggtggcacgaggagacttccagcttccaccttccgtttggggagatgacaatcacacttgatgatgt 51897574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 236
Target Start/End: Original strand, 42722909 - 42723037
Alignment:
Q  110 ttggcttcatgataccagctacagcctgattgaccacaatctgatttgtgcatttgtcgagaggtg--acgaggagacttcgaatttccaccttccgtta 207  Q
    |||||| || || |||||||||| | ||||||||||   |||||   |||| ||||| || |||||  ||||||||||||| |  ||||||||| ||||     
T  42722909 ttggctacaggacaccagctacaacatgattgaccatggtctgaaccgtgcctttgtggaaaggtggcacgaggagacttccagcttccacctttcgttt 42723008  T
Q  208 ggggggatgacagtaacacttgatgatgt 236  Q
    ||||  |||||||| ||||||||||||||    
T  42723009 ggggaaatgacagtcacacttgatgatgt 42723037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 3408687 - 3408450
Alignment:
Q  1 taaaatgcatcaataatggaaagaagatagacgcgatgcaagataaacagaccatctctatcatggatacacggtggtggcgtgacaaaattcagcgcac 100  Q
    ||||||||||||| ||  |||| |||||||| | |||||| |||||  | ||||   ||||||||| | |||||||||||    ||||| | ||| ||||    
T  3408687 taaaatgcatcaacaactgaaaaaagatagaagtgatgcatgataatgacaccagacctatcatggttgcacggtggtgggagaacaaattgcagggcac 3408588  T
Q  101 cagtctttcttggcttcatgataccagctacagcctgattgaccacaatctgatttgtgcatttgtcgagaggtg--acgaggagacttcgaatttccac 198  Q
    |   |||  |||||| || || |||||||||||| ||||||||||   |||||||| ||| ||| | ||||||||  ||||||||||||| |  ||||||    
T  3408587 cgaccttggttggctccaggacaccagctacagcatgattgaccatggtctgatttatgcctttttggagaggtggcacgaggagacttccagcttccac 3408488  T
Q  199 cttccgttaggggggatgacagtaacacttgatgatgt 236  Q
    ||||||||  ||| ||||||||| |||||||| |||||    
T  3408487 cttccgtttcgggagatgacagtcacacttgacgatgt 3408450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 109 - 236
Target Start/End: Original strand, 21639161 - 21639287
Alignment:
Q  109 cttggcttcatgataccagctacagcctgattgaccacaatctgatttgtgcatttgtcgagaggtg--acgaggagacttcgaatttccaccttccgtt 206  Q
    |||||||||| ||||||||||||||||||||||||||   ||| |||| ||| ||||| ||||||||  || |||||||||| |  ||||||||    ||    
T  21639161 cttggcttcaggataccagctacagcctgattgaccatggtctaatttatgcctttgtggagaggtggcacaaggagacttccagcttccacct---att 21639257  T
Q  207 aggggggatgacagtaacacttgatgatgt 236  Q
     |||| ||| ||||| ||||||||||||||    
T  21639258 tggggagataacagtcacacttgatgatgt 21639287  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 110 - 236
Target Start/End: Complemental strand, 30845068 - 30844940
Alignment:
Q  110 ttggcttcatgataccagctacagcctgattgaccacaatctgatttgtgcatttgtcgagaggtg--acgaggagacttcgaatttccaccttccgtta 207  Q
    |||||| || ||||||||||||| | ||||||||||   |||||| | ||| ||||| |||| |||  ||||||||||||| |  ||||||||||||||     
T  30845068 ttggctccaagataccagctacatcatgattgaccatggtctgatctatgcctttgtggagatgtggcacgaggagacttccagcttccaccttccgttt 30844969  T
Q  208 ggggggatgacagtaacacttgatgatgt 236  Q
    | || ||| ||||| ||||||||||||||    
T  30844968 gaggagataacagtcacacttgatgatgt 30844940  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 236
Target Start/End: Original strand, 901535 - 901670
Alignment:
Q  103 gtctttcttggcttcatgataccagctacagcctgattgaccacaatctgatttgtgcatttgtcgagaggtg--acgaggagacttcgaatttccacct 200  Q
    |||||||||||||| |  ||||||||| ||||  |||||||||| ||||  | | ||||||||  ||||||||  |||| ||||||| ||  ||||| ||    
T  901535 gtctttcttggctttagaataccagcttcagcaagattgaccacgatctcctatctgcatttgcagagaggtggcacgatgagactttgagcttccatct 901634  T
Q  201 tccgttaggggggatgacagtaacacttgatgatgt 236  Q
    ||  || |||| ||||||||| ||||||||||||||    
T  901635 tctatttggggagatgacagtgacacttgatgatgt 901670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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