View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6604_high_13 (Length: 251)

Name: NF6604_high_13
Description: NF6604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6604_high_13
NF6604_high_13
[»] chr8 (3 HSPs)
chr8 (94-231)||(16021741-16021878)
chr8 (103-237)||(16471958-16472092)
chr8 (103-237)||(16476529-16476663)
[»] chr3 (4 HSPs)
chr3 (100-229)||(27811670-27811799)
chr3 (102-233)||(55225714-55225845)
chr3 (94-233)||(38744439-38744578)
chr3 (212-241)||(42343964-42343993)
[»] chr1 (2 HSPs)
chr1 (100-230)||(22567589-22567719)
chr1 (94-232)||(49381366-49381504)
[»] chr6 (1 HSPs)
chr6 (102-230)||(5044852-5044980)
[»] chr7 (2 HSPs)
chr7 (10-96)||(19224257-19224343)
chr7 (139-230)||(3916067-3916158)
[»] chr5 (3 HSPs)
chr5 (5-96)||(22081678-22081769)
chr5 (11-96)||(1582948-1583033)
chr5 (5-82)||(4269998-4270075)


Alignment Details
Target: chr8 (Bit Score: 94; Significance: 5e-46; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 94 - 231
Target Start/End: Complemental strand, 16021878 - 16021741
Alignment:
Q  94 atagtctgtttggaacagcgtttaaaggccatttctcatggcccgaggcaactttgaagtgaaaatatagaaactacaaaagacaacttcacataaaatg 193  Q
    |||| ||||||||||||||||||||| ||||||||||  |||| |||||||||||||||||||||||||||| |||||||||||| ||||||| |||| |    
T  16021878 ataggctgtttggaacagcgtttaaatgccatttctcgcggcctgaggcaactttgaagtgaaaatatagaagctacaaaagacagcttcacacaaaacg 16021779  T
Q  194 tggttttcttgcctttctaccgcttcaacaaacacacc 231  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  16021778 tggttttctttgctttctaccgcttcaacaaacacacc 16021741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 103 - 237
Target Start/End: Complemental strand, 16472092 - 16471958
Alignment:
Q  103 ttggaacagcgtttaaaggccatttctcatggcccgaggcaactttgaagtgaaaatatagaaactacaaaagacaacttcacataaaatgtggttttct 202  Q
    ||||||||||| ||||| ||||||||||| |  || |||||||||| |||| ||||||||||| ||| |||||||| ||||||| |||||||||||||||    
T  16472092 ttggaacagcgattaaatgccatttctcacgatccaaggcaactttaaagtaaaaatatagaagctaaaaaagacagcttcacacaaaatgtggttttct 16471993  T
Q  203 tgcctttctaccgcttcaacaaacacaccattagt 237  Q
    |  |||||||| |||||||||||||||||| ||||    
T  16471992 ttgctttctacagcttcaacaaacacaccaatagt 16471958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 103 - 237
Target Start/End: Complemental strand, 16476663 - 16476529
Alignment:
Q  103 ttggaacagcgtttaaaggccatttctcatggcccgaggcaactttgaagtgaaaatatagaaactacaaaagacaacttcacataaaatgtggttttct 202  Q
    ||||||||||| ||||| ||||||||||| |  || |||||||||| |||| ||||||||||| ||| |||||||| ||||||| |||||||||||||||    
T  16476663 ttggaacagcgattaaatgccatttctcacgatccaaggcaactttaaagtaaaaatatagaagctaaaaaagacagcttcacacaaaatgtggttttct 16476564  T
Q  203 tgcctttctaccgcttcaacaaacacaccattagt 237  Q
    |  |||||||| |||||||||||||||||| ||||    
T  16476563 ttgctttctacagcttcaacaaacacaccaatagt 16476529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 94; Significance: 5e-46; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 100 - 229
Target Start/End: Complemental strand, 27811799 - 27811670
Alignment:
Q  100 tgtttggaacagcgtttaaaggccatttctcatggcccgaggcaactttgaagtgaaaatatagaaactacaaaagacaacttcacataaaatgtggttt 199  Q
    ||||||||||| |||||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||| |||||||    
T  27811799 tgtttggaacaacgtttaaaggccatttctcgcggcccgaggcaactttgaagtgaaaatatagaagctacaaaagacagcttcacacaaaacgtggttt 27811700  T
Q  200 tcttgcctttctaccgcttcaacaaacaca 229  Q
    ||||  ||||||||||||||||||||||||    
T  27811699 tctttgctttctaccgcttcaacaaacaca 27811670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 102 - 233
Target Start/End: Original strand, 55225714 - 55225845
Alignment:
Q  102 tttggaacagcgtttaaaggccatttctcatggcccgaggcaactttgaagtgaaaatatagaaactacaaaagacaacttcacataaaatgtggttttc 201  Q
    ||||||||||| |||||||| ||||||||   ||||||| |||||||||||||||||||||||| |||||||||||| ||||||| ||||  ||||||||    
T  55225714 tttggaacagcatttaaaggtcatttctcgcagcccgagacaactttgaagtgaaaatatagaagctacaaaagacagcttcacacaaaacatggttttc 55225813  T
Q  202 ttgcctttctaccgcttcaacaaacacaccat 233  Q
    || |||||||||||||||| | ||||||||||    
T  55225814 ttacctttctaccgcttcagcgaacacaccat 55225845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 94 - 233
Target Start/End: Original strand, 38744439 - 38744578
Alignment:
Q  94 atagtctgtttggaacagcgtttaaaggccatttctcatggcccgaggcaactttgaagtgaaaatatagaaactacaaaagacaacttcacataaaatg 193  Q
    |||| |||||||||||||| |||||| ||||||||||  || |||||||||| |||||||||||||||||||  |||||||||||  |||||| | || |    
T  38744439 ataggctgtttggaacagcatttaaatgccatttctcgcgggccgaggcaacgttgaagtgaaaatatagaagttacaaaagacagtttcacacataacg 38744538  T
Q  194 tggttttcttgcctttctaccgcttcaacaaacacaccat 233  Q
    ||||||||||  |||| |||||||||||||||||||||||    
T  38744539 tggttttctttgctttttaccgcttcaacaaacacaccat 38744578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 212 - 241
Target Start/End: Complemental strand, 42343993 - 42343964
Alignment:
Q  212 accgcttcaacaaacacaccattagtataa 241  Q
    ||||||||||||||||||||||||||||||    
T  42343993 accgcttcaacaaacacaccattagtataa 42343964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 100 - 230
Target Start/End: Complemental strand, 22567719 - 22567589
Alignment:
Q  100 tgtttggaacagcgtttaaaggccatttctcatggcccgaggcaactttgaagtgaaaatatagaaactacaaaagacaacttcacataaaatgtggttt 199  Q
    |||||||||||||||||||||||||||||||   ||||||||||||||| || ||||||||||||| |||||||||||||||||||| |||| |||||||    
T  22567719 tgtttggaacagcgtttaaaggccatttctcgcagcccgaggcaactttaaaatgaaaatatagaagctacaaaagacaacttcacacaaaacgtggttt 22567620  T
Q  200 tcttgcctttctaccgcttcaacaaacacac 230  Q
    ||||  |||||||||||||||||||||||||    
T  22567619 tctttgctttctaccgcttcaacaaacacac 22567589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 94 - 232
Target Start/End: Original strand, 49381366 - 49381504
Alignment:
Q  94 atagtctgtttggaacagcgtttaaaggccatttctcatggcccgaggcaactttgaagtgaaaatatagaaactacaaaagacaacttcacataaaatg 193  Q
    |||| ||||||||||||||||||||| ||||||||||| |  ||||||||||||| |||| ||||||||||| ||| ||  |||| |||||||||||| |    
T  49381366 ataggctgtttggaacagcgtttaaatgccatttctcacgatccgaggcaactttaaagtaaaaatatagaagctaaaagggacagcttcacataaaacg 49381465  T
Q  194 tggttttcttgcctttctaccgcttcaacaaacacacca 232  Q
    ||||||||||  |||||||||||||||||||||||||||    
T  49381466 tggttttctttgctttctaccgcttcaacaaacacacca 49381504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 102 - 230
Target Start/End: Original strand, 5044852 - 5044980
Alignment:
Q  102 tttggaacagcgtttaaaggccatttctcatggcccgaggcaactttgaagtgaaaatatagaaactacaaaagacaacttcacataaaatgtggttttc 201  Q
    |||||||||||||||||||||||||||||  ||||||||| ||||||||||| ||||||||||| |||||||||||| ||||||| |||| |||||||||    
T  5044852 tttggaacagcgtttaaaggccatttctcgcggcccgaggtaactttgaagtaaaaatatagaagctacaaaagacagcttcacacaaaacgtggttttc 5044951  T
Q  202 ttgcctttctaccgcttcaacaaacacac 230  Q
    ||  |||||||||||||||||||||||||    
T  5044952 tttgctttctaccgcttcaacaaacacac 5044980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 10 - 96
Target Start/End: Complemental strand, 19224343 - 19224257
Alignment:
Q  10 caatcagattcacattcaacaggtcaaaatccattattccatgccatctgaaggttgtgaaaaatagcttgcagctctacattcata 96  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  19224343 caatctgattcacattcaacaggtcaaaatccattattccatgccatttgaaggtcgtgaaaaatagcttgcagctctacattcata 19224257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 230
Target Start/End: Complemental strand, 3916158 - 3916067
Alignment:
Q  139 aggcaactttgaagtgaaaatatagaaactacaaaagacaacttcacataaaatgtggttttcttgcctttctaccgcttcaacaaacacac 230  Q
    |||||| ||||| ||||||||| |||| |||||||||  | |||||||  ||| ||||||||  || | | |||||||||||||||||||||    
T  3916158 aggcaaatttgatgtgaaaataaagaagctacaaaaggtagcttcacaccaaacgtggttttactggcatcctaccgcttcaacaaacacac 3916067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 5 - 96
Target Start/End: Original strand, 22081678 - 22081769
Alignment:
Q  5 attggcaatcagattcacattcaacaggtcaaaatccattattccatgccatctgaaggttgtgaaaaatagcttgcagctctacattcata 96  Q
    |||| ||||||||||||||||||||| ||| ||| | ||||||||||||||||||||||  |||||| |||||||| |||||| ||||||||    
T  22081678 attgacaatcagattcacattcaacatgtcgaaagctattattccatgccatctgaaggccgtgaaagatagcttgtagctctgcattcata 22081769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 96
Target Start/End: Complemental strand, 1583033 - 1582948
Alignment:
Q  11 aatcagattcacattcaacaggtcaaaatccattattccatgccatctgaaggttgtgaaaaatagcttgcagctctacattcata 96  Q
    |||| |||| |||||||||| ||| ||| ||||||||||||||||||||||||  |||||| |||||| | |||| | ||||||||    
T  1583033 aatctgatttacattcaacatgtcgaaagccattattccatgccatctgaaggccgtgaaagatagctcgtagctatgcattcata 1582948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 82
Target Start/End: Original strand, 4269998 - 4270075
Alignment:
Q  5 attggcaatcagattcacattcaacaggtcaaaatccattattccatgccatctgaaggttgtgaaaaatagcttgca 82  Q
    |||||||||| ||||||||||||| | ||| ||| |||||||| |||||||||| ||||  || |||||||| |||||    
T  4269998 attggcaatctgattcacattcaatatgtcgaaaaccattatttcatgccatctaaaggccgtaaaaaatagtttgca 4270075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University