View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6604_high_15 (Length: 245)

Name: NF6604_high_15
Description: NF6604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6604_high_15
NF6604_high_15
[»] chr8 (4 HSPs)
chr8 (7-224)||(26890468-26890692)
chr8 (177-244)||(10844589-10844656)
chr8 (177-244)||(22548523-22548590)
chr8 (118-162)||(25307998-25308042)
[»] chr2 (2 HSPs)
chr2 (177-243)||(83123-83189)
chr2 (177-244)||(29804787-29804854)
[»] chr1 (5 HSPs)
chr1 (171-244)||(52250311-52250384)
chr1 (177-244)||(20056790-20056857)
chr1 (177-244)||(50002681-50002748)
chr1 (177-244)||(52250648-52250715)
chr1 (177-244)||(52250985-52251052)
[»] chr7 (2 HSPs)
chr7 (177-244)||(13122479-13122546)
chr7 (191-244)||(35474109-35474162)
[»] chr6 (1 HSPs)
chr6 (177-244)||(20850426-20850493)
[»] chr4 (2 HSPs)
chr4 (177-244)||(44471293-44471360)
chr4 (177-244)||(49998741-49998808)
[»] chr3 (2 HSPs)
chr3 (177-244)||(50347851-50347918)
chr3 (182-244)||(39641042-39641104)
[»] chr5 (1 HSPs)
chr5 (176-244)||(8642007-8642075)


Alignment Details
Target: chr8 (Bit Score: 163; Significance: 4e-87; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 7 - 224
Target Start/End: Complemental strand, 26890692 - 26890468
Alignment:
Q  7 atactcatcaataaaaggtaatagcccttaaaagatggtagagttacttatattcacttttatt-------tatttatattgacataatatcaatcaaaa 99  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||       |||||||||||||||||||||||||||||    
T  26890692 atactcatcaataaaaggtaatagcccttaaaagatagtagagttacttatattcactttttttaagaagttatttatattgacataatatcaatcaaaa 26890593  T
Q  100 ctgtaacattttgaattgcttttaagattgccgattgatcacataaattaacacgagtctttttagactctcattctaaaattgcttcaaatcaaacacg 199  Q
    ||||||||||||||||||||||||  |||| |||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  26890592 ctgtaacattttgaattgcttttagaattgtcgattgattacataaattaacacgagtcttttcagactctcattttaaaattgcttcaaatcaaacacg 26890493  T
Q  200 ctcaaatatagagttattatcgaat 224  Q
    |||||||||| ||||||||||||||    
T  26890492 ctcaaatataaagttattatcgaat 26890468  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 244
Target Start/End: Original strand, 10844589 - 10844656
Alignment:
Q  177 aaaattgcttcaaatcaaacacgctcaaatatagagttattatcgaatgagctaccaaaaagaagatg 244  Q
    ||||||||||||| |||| |||||| || | | ||||| |||| |||||||||||| |||||||||||    
T  10844589 aaaattgcttcaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatg 10844656  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 244
Target Start/End: Original strand, 22548523 - 22548590
Alignment:
Q  177 aaaattgcttcaaatcaaacacgctcaaatatagagttattatcgaatgagctaccaaaaagaagatg 244  Q
    ||||||||| ||| |||| |||||| || | | |||||||||| |||||||||||| |||||||||||    
T  22548523 aaaattgctccaagtcaagcacgcttaactgtggagttattatggaatgagctaccgaaaagaagatg 22548590  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 162
Target Start/End: Complemental strand, 25308042 - 25307998
Alignment:
Q  118 cttttaagattgccgattgatcacataaattaacacgagtctttt 162  Q
    |||||| ||||||||| ||||| ||||||| ||||||||||||||    
T  25308042 cttttaggattgccgactgatcccataaatcaacacgagtctttt 25307998  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 177 - 243
Target Start/End: Complemental strand, 83189 - 83123
Alignment:
Q  177 aaaattgcttcaaatcaaacacgctcaaatatagagttattatcgaatgagctaccaaaaagaagat 243  Q
    ||||||| | ||||||||||||||| || | ||||||| |||| ||||||||||||||||| |||||    
T  83189 aaaattgttccaaatcaaacacgcttaactgtagagttcttatggaatgagctaccaaaaaaaagat 83123  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 244
Target Start/End: Complemental strand, 29804854 - 29804787
Alignment:
Q  177 aaaattgcttcaaatcaaacacgctcaaatatagagttattatcgaatgagctaccaaaaagaagatg 244  Q
    ||||||||||||| |||| |||||| || | | ||||| |||| |||||||||||| |||||||||||    
T  29804854 aaaattgcttcaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatg 29804787  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 244
Target Start/End: Complemental strand, 52250384 - 52250311
Alignment:
Q  171 cattctaaaattgcttcaaatcaaacacgctcaaatatagagttattatcgaatgagctaccaaaaagaagatg 244  Q
    ||||| ||||||||||||| |||| |||||| || | | ||||| |||| |||||||||||| |||||||||||    
T  52250384 cattccaaaattgcttcaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatg 52250311  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 244
Target Start/End: Original strand, 20056790 - 20056857
Alignment:
Q  177 aaaattgcttcaaatcaaacacgctcaaatatagagttattatcgaatgagctaccaaaaagaagatg 244  Q
    ||||||||| ||| ||||||||||| || | | ||||| |||| |||||||||||| |||||||||||    
T  20056790 aaaattgctccaagtcaaacacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatg 20056857  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 244
Target Start/End: Original strand, 50002681 - 50002748
Alignment:
Q  177 aaaattgcttcaaatcaaacacgctcaaatatagagttattatcgaatgagctaccaaaaagaagatg 244  Q
    ||||||||| ||| ||||||||||| || ||| ||||| |||  |||||||||||| |||||||||||    
T  50002681 aaaattgctccaagtcaaacacgcttaactatggagttcttaaagaatgagctaccgaaaagaagatg 50002748  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 244
Target Start/End: Complemental strand, 52250715 - 52250648
Alignment:
Q  177 aaaattgcttcaaatcaaacacgctcaaatatagagttattatcgaatgagctaccaaaaagaagatg 244  Q
    ||||||||||||| |||| |||||| || | | ||||| |||| |||||||||||| |||||||||||    
T  52250715 aaaattgcttcaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatg 52250648  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 244
Target Start/End: Complemental strand, 52251052 - 52250985
Alignment:
Q  177 aaaattgcttcaaatcaaacacgctcaaatatagagttattatcgaatgagctaccaaaaagaagatg 244  Q
    ||||||||||||| |||| |||||| || | | ||||| |||| |||||||||||| |||||||||||    
T  52251052 aaaattgcttcaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatg 52250985  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 244
Target Start/End: Original strand, 13122479 - 13122546
Alignment:
Q  177 aaaattgcttcaaatcaaacacgctcaaatatagagttattatcgaatgagctaccaaaaagaagatg 244  Q
    ||||||||| |||||||| |||||| || | | ||||| |||| |||||||||||| |||||||||||    
T  13122479 aaaattgctccaaatcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatg 13122546  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 191 - 244
Target Start/End: Original strand, 35474109 - 35474162
Alignment:
Q  191 tcaaacacgctcaaatatagagttattatcgaatgagctaccaaaaagaagatg 244  Q
    ||||||||||| || | | ||||| |||| ||||||||||||||||||||||||    
T  35474109 tcaaacacgcttaactgtggagttcttatggaatgagctaccaaaaagaagatg 35474162  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 244
Target Start/End: Complemental strand, 20850493 - 20850426
Alignment:
Q  177 aaaattgcttcaaatcaaacacgctcaaatatagagttattatcgaatgagctaccaaaaagaagatg 244  Q
    ||||||||| ||| |||| |||||| || | ||||||| |||| |||||||||||| |||||||||||    
T  20850493 aaaattgctccaagtcaagcacgcttaactgtagagttcttatggaatgagctaccgaaaagaagatg 20850426  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 244
Target Start/End: Original strand, 44471293 - 44471360
Alignment:
Q  177 aaaattgcttcaaatcaaacacgctcaaatatagagttattatcgaatgagctaccaaaaagaagatg 244  Q
    ||||||||| |||||||| |||||| || | | ||||| |||| |||||||||||| |||||||||||    
T  44471293 aaaattgctccaaatcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatg 44471360  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 244
Target Start/End: Complemental strand, 49998808 - 49998741
Alignment:
Q  177 aaaattgcttcaaatcaaacacgctcaaatatagagttattatcgaatgagctaccaaaaagaagatg 244  Q
    ||||||||| ||| ||||||||||| || | | ||||| |||| |||||||||||| |||||||||||    
T  49998808 aaaattgctccaagtcaaacacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatg 49998741  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 244
Target Start/End: Complemental strand, 50347918 - 50347851
Alignment:
Q  177 aaaattgcttcaaatcaaacacgctcaaatatagagttattatcgaatgagctaccaaaaagaagatg 244  Q
    ||||||||| ||| |||| |||||| || | | ||||| |||| ||||||||||||||||||||||||    
T  50347918 aaaattgctccaagtcaagcacgcttaactgtggagttcttatggaatgagctaccaaaaagaagatg 50347851  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 244
Target Start/End: Complemental strand, 39641104 - 39641042
Alignment:
Q  182 tgcttcaaatcaaacacgctcaaatatagagttattatcgaatgagctaccaaaaagaagatg 244  Q
    |||| ||| ||||||||||| || | | ||||| |||| ||||||||||||||||||||||||    
T  39641104 tgctccaagtcaaacacgcttaactgtggagttcttatggaatgagctaccaaaaagaagatg 39641042  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 244
Target Start/End: Original strand, 8642007 - 8642075
Alignment:
Q  176 taaaattgcttcaaatcaaacacgctcaaatatagagttattatcgaatgagctaccaaaaagaagatg 244  Q
    |||||||||| ||| |||| |||||| || | | ||||| |||| |||||||||||| |||||||||||    
T  8642007 taaaattgctccaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatg 8642075  T

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