View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6604_high_3 (Length: 424)
Name: NF6604_high_3
Description: NF6604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6604_high_3 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 17 - 424
Target Start/End: Original strand, 41290665 - 41291070
Alignment:
| Q |
17 |
acatctttatgaggagcaatggtgggagaagaccttcgtcggccaggacccagagaaggcttggttggcatccattgatgttcacacttggttcctcgca |
116 |
Q |
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| T |
41290665 |
acatctttatgaggagcaatggtgggagaagaccttcgtcggccaggacccagagaaggcttggttggcatccattgatgttcacacttggttcctcgca |
41290764 |
T |
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| Q |
117 |
agccttatttgctgcctctgcttccttgaatgcaattttcatattatttatcaatatttgatgaaattaagaaataggaatgactttacgtgtttaatgt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41290765 |
agccttatttgctgcctctgcttccttgaatgcaattttcatattatttatcaatatttgatgaaattaagaaataggaatgactttacgtgtttaatgt |
41290864 |
T |
|
| Q |
217 |
aatgattgatcacacaaggatgtcgtagcctttgtatctgttggaatgcttgttggaaatgttgacaacttcaaggaagtcgctgtaattttggaattgt |
316 |
Q |
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| T |
41290865 |
aatgattgatcacacaaggatgtcgtagcctttggatctgttggaatgcttgttggaaatgttgacaacttcaaggaagtcgctgtacttttggaattgt |
41290964 |
T |
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| Q |
317 |
tatctgtgtgtgtatttgggagtctcacaggacctccaacgaacacttttgtcagcgttgttgtgtcccctaactgagattcattgcttgttgttgttgc |
416 |
Q |
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|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
41290965 |
tatc--tgtgtgtatttgggagtctcacaggacctccatcgaacacttttgtcagcgttgttgtgtcccctaactgtgattcattgcttgttgttgttgc |
41291062 |
T |
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| Q |
417 |
tgcgtttc |
424 |
Q |
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| T |
41291063 |
tgcgtttc |
41291070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 89; Significance: 9e-43; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 38 - 319
Target Start/End: Complemental strand, 27420769 - 27420486
Alignment:
| Q |
38 |
gtgggagaagaccttcgtcggccaggacccagagaaggcttggttggcatccattgatgttcacacttggttcctcgcaagccttatttgctgcctctgc |
137 |
Q |
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| T |
27420769 |
gtgggagaagacctttatctgctagcacccagagaaggttggcttggagtccattaatgttcatccttgattcgtcgcaagccttcttcgttgcctctgc |
27420670 |
T |
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| Q |
138 |
ttccttgaatgcaattttcatattatttatcaatatttgatgaaattaagaaataggaatgactttacg--tgtttaatgtaatgattgatcacacaagg |
235 |
Q |
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| T |
27420669 |
ttcctagaatgttaccttcatctaatttattaatatttgatcaaattaagaatttggaatgaatttcctattgcttaatgttatgattgatcacacaagg |
27420570 |
T |
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| Q |
236 |
atgtcgtagcctttgtatctgttggaatgcttgttggaaatgttgacaacttcaaggaagtcgctgtaattttggaattgttat |
319 |
Q |
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| T |
27420569 |
atgtcgtagcctttagatttgttggtaagcttgtcgaaaatgatgacagcttcaaggatgtcgctgtacttttggaagtgttat |
27420486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 38 - 319
Target Start/End: Complemental strand, 44607976 - 44607693
Alignment:
| Q |
38 |
gtgggagaagaccttcgtcggccaggacccagagaaggcttggttggcatccattgatgttcacacttggttcctcgcaagccttatttgctgcctctgc |
137 |
Q |
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| T |
44607976 |
gtgggagaagacctttatctgctagcacccagagaaggttggcttggagtccattaatgttcatccttgattcgtcgcaagccttcttcgttgcctctgc |
44607877 |
T |
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| Q |
138 |
ttccttgaatgcaattttcatattatttatcaatatttgatgaaattaagaaataggaatgactttacg--tgtttaatgtaatgattgatcacacaagg |
235 |
Q |
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| T |
44607876 |
ttcctagaatgttaccttcatctaatttattaatatttgatcaaattaagaatttggaatgaatttcctattgcttaatgttatgattgatcacacaagg |
44607777 |
T |
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| Q |
236 |
atgtcgtagcctttgtatctgttggaatgcttgttggaaatgttgacaacttcaaggaagtcgctgtaattttggaattgttat |
319 |
Q |
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| T |
44607776 |
atgtcgtagcctttagatttgttggtaagcttgtcgaaaatgatgacagcttcaaggatgtcgctgtacttttggaagtgttat |
44607693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 210 - 318
Target Start/End: Original strand, 18712077 - 18712185
Alignment:
| Q |
210 |
ttaatgtaatgattgatcacacaaggatgtcgtagcctttgtatctgttggaatgcttgttggaaatgttgacaacttcaaggaagtcgctgtaattttg |
309 |
Q |
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| T |
18712077 |
ttaatgtaatgattgatcacacaaggatgtcgtagcctttagatttgttggtaagcttgtcgaaaatgatgacagcttcaaggatgtcactgtccttttg |
18712176 |
T |
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| Q |
310 |
gaattgtta |
318 |
Q |
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| T |
18712177 |
gaagtgtta |
18712185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 148
Target Start/End: Original strand, 18711953 - 18712063
Alignment:
| Q |
38 |
gtgggagaagaccttcgtcggccaggacccagagaaggcttggttggcatccattgatgttcacacttggttcctcgcaagccttatttgctgcctctgc |
137 |
Q |
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||||||||||||||| || || || |||||||||||| | | |||| |||||| ||||||| |||| ||| ||||||||||| || | ||||| ||| |
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| T |
18711953 |
gtgggagaagacctttatctgcaagcacccagagaaggttggcttggagtccattaatgttcatccttgattcgtcgcaagccttcttcgttgcctttgc |
18712052 |
T |
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| Q |
138 |
ttccttgaatg |
148 |
Q |
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| T |
18712053 |
ttcctagaatg |
18712063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 377
Target Start/End: Complemental strand, 48649845 - 48649815
Alignment:
| Q |
347 |
gacctccaacgaacacttttgtcagcgttgt |
377 |
Q |
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| T |
48649845 |
gacctccaacgaacacttttgtcagcgttgt |
48649815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 88 - 128
Target Start/End: Complemental strand, 48650026 - 48649986
Alignment:
| Q |
88 |
ccattgatgttcacacttggttcctcgcaagccttatttgc |
128 |
Q |
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| T |
48650026 |
ccattgatgatcacagttggttcctcgcaagccttctttgc |
48649986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 259
Target Start/End: Original strand, 46111133 - 46111180
Alignment:
| Q |
212 |
aatgtaatgattgatcacacaaggatgtcgtagcctttgtatctgttg |
259 |
Q |
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| T |
46111133 |
aatgtaatgattgatcaaacaaggatgtcttagcatttgaatctgttg |
46111180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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