View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6604_high_4 (Length: 392)

Name: NF6604_high_4
Description: NF6604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6604_high_4
NF6604_high_4
[»] chr2 (7 HSPs)
chr2 (15-355)||(2326660-2326999)
chr2 (12-355)||(2330375-2330717)
chr2 (15-310)||(2350726-2351020)
chr2 (14-355)||(2320806-2321146)
chr2 (14-355)||(2303105-2303445)
chr2 (14-355)||(2293492-2293832)
chr2 (14-355)||(2309823-2310163)
[»] chr8 (1 HSPs)
chr8 (120-355)||(41126687-41126919)


Alignment Details
Target: chr2 (Bit Score: 305; Significance: 1e-171; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 15 - 355
Target Start/End: Complemental strand, 2326999 - 2326660
Alignment:
Q  15 catcaccacccatgacctccctaatctcctgcacaagcctcctttgaacgtccgggtacttcaatcaaatttgccataatccaatgcaaagcggtggaag 114  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||    
T  2326999 catcaccacccatgaactccctaatctcctgcacaagcctcctttgaacgtccgggtacttcac-caaattcgccataatccaatgcaaagcggtggaag 2326901  T
Q  115 tagtatctgtaccagcattcaaaaactccgaacaaagactaaccatttcatcctcagtcaacttctgtttttccattggcaactccaactccaaaagtgt 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  2326900 tagtatctgtaccagcattcaaaaactccgaacaaagactaaccatttcatcctcagtcaacttccgtttttccattggcaactccaactccaaaagtgt 2326801  T
Q  215 atccacgtaggaaacaacagtattagcattgttcaatttactctccttaacttgcttcctccctcttatcagctgaagcaaaacatcttcttgatctcta 314  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  2326800 atccacgtaggaaacaacagtattagcattgttcaatttagtctccttaacttgcttcctccctcttatcagcggaagcaaaacatcttcttgatctcta 2326701  T
Q  315 cgcaacatcaacaattcctcccattttttacgcaacaaaat 355  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  2326700 cgcaacatcaacaattcctcccattgtttacgcaacaaaat 2326660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 12 - 355
Target Start/End: Complemental strand, 2330717 - 2330375
Alignment:
Q  12 catcatcaccacccatgacctccctaatctcctgcacaagcctcctttgaacgtccgggtacttcaatcaaatttgccataatccaatgcaaagcggtgg 111  Q
    ||||||| |||||||| |||||  ||||||||| ||||||| |||  |||||||||||||||||||  |||||| ||||||||||| |||||||||||||    
T  2330717 catcatcgccacccatcacctctgtaatctcctccacaagcttcccctgaacgtccgggtacttcac-caaattcgccataatccattgcaaagcggtgg 2330619  T
Q  112 aagtagtatctgtaccagcattcaaaaactccgaacaaagactaaccatttcatcctcagtcaacttctgtttttccattggcaactccaactccaaaag 211  Q
    |||||||||| || ||| | ||||||||||||||||||||||||| ||||||||||||| |||| ||| |||| |||   |||||||||||||||| |||    
T  2330618 aagtagtatccgtgccaccgttcaaaaactccgaacaaagactaatcatttcatcctcactcaatttccgtttctcctgaggcaactccaactccataag 2330519  T
Q  212 tgtatccacgtaggaaacaacagtattagcattgttcaatttactctccttaacttgcttcctccctcttatcagctgaagcaaaacatcttcttgatct 311  Q
     ||||| || || |||||||||||||||  |||||||||| ||||||||||||| ||||||||| ||||||||||| |||||| ||||||||||||||||    
T  2330518 agtatctacatacgaaacaacagtattaatattgttcaatctactctccttaacatgcttcctcgctcttatcagcggaagcagaacatcttcttgatct 2330419  T
Q  312 ctacgcaacatcaacaattcctcccattttttacgcaacaaaat 355  Q
     || ||||| ||  ||| || ||||||  |||||||||||||||    
T  2330418 ttaagcaacttcgccaactcatcccatcgtttacgcaacaaaat 2330375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 15 - 310
Target Start/End: Complemental strand, 2351020 - 2350726
Alignment:
Q  15 catcaccacccatgacctccctaatctcctgcacaagcctcctttgaacgtccgggtacttcaatcaaatttgccataatccaatgcaaagcggtggaag 114  Q
    |||||| |||||| |||||||||||||| | ||||||||||| ||| ||||| ||||||||||  |||||||||||||||||| |||||||| |||||||    
T  2351020 catcacgacccatcacctccctaatctcgtccacaagcctcccttgcacgtcggggtacttcac-caaatttgccataatccattgcaaagccgtggaag 2350922  T
Q  115 tagtatctgtaccagcattcaaaaactccgaacaaagactaaccatttcatcctcagtcaacttctgtttttccattggcaactccaactccaaaagtgt 214  Q
    |||||||| | ||||||||||||||||| ||||||||||||||||||||||| ||| |||| ||| |||| ||    |||||||||||||||||||| ||    
T  2350921 tagtatctatcccagcattcaaaaactctgaacaaagactaaccatttcatcttcactcaatttccgtttctcatcaggcaactccaactccaaaagagt 2350822  T
Q  215 atccacgtaggaaacaacagtattagcattgttcaatttactctccttaacttgcttcctccctcttatcagctgaagcaaaacatcttcttgatc 310  Q
    |||||| || ||||| ||||  ||| ||||||||||| ||||||| ||||||||||||||| |||| |||||| ||||||||||||||||||||||    
T  2350821 atccacatacgaaactacagggttaacattgttcaatctactctctttaacttgcttcctcgctctaatcagcggaagcaaaacatcttcttgatc 2350726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 14 - 355
Target Start/End: Complemental strand, 2321146 - 2320806
Alignment:
Q  14 tcatcaccacccatgacctccctaatctcctgcacaagcctcctttgaacgtccgggtacttcaatcaaatttgccataatccaatgcaaagcggtggaa 113  Q
    ||||||| | |||| ||||| | |||||||| |||||||||||  || || |||||||||||||  |||||| ||||||||||| |||||||| ||||||    
T  2321146 tcatcactaaccatcacctcacgaatctcctccacaagcctcccctgcacttccgggtacttcac-caaattcgccataatccactgcaaagcagtggaa 2321048  T
Q  114 gtagtatctgtaccagcattcaaaaactccgaacaaagactaaccatttcatcctcagtcaacttctgtttttccattggcaactccaactccaaaagtg 213  Q
    |||||||| || ||| | ||||||||||||||||||||| |||||||||||| |||| |||||||  |||| |||   |||||||||||||| ||||| |    
T  2321047 gtagtatccgtcccaccgttcaaaaactccgaacaaagattaaccatttcattctcactcaactttcgtttctcctcgggcaactccaactctaaaagag 2320948  T
Q  214 tatccacgtaggaaacaacagtattagcattgttcaatttactctccttaacttgcttcctccctcttatcagctgaagcaaaacatcttcttgatctct 313  Q
    ||||  | || |||||||| |||||| ||||||||||||||||||||||||||||||||||  ||||||||||| |||||| |||||| ||||||||  |    
T  2320947 tatctgcatacgaaacaactgtattatcattgttcaatttactctccttaacttgcttccttgctcttatcagcggaagcagaacatcctcttgatcctt 2320848  T
Q  314 acgcaacatcaacaattcctcccattttttacgcaacaaaat 355  Q
    | | ||| |||| || |||||||||   ||||||||||||||    
T  2320847 aagtaacttcaaaaactcctcccatcggttacgcaacaaaat 2320806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 14 - 355
Target Start/End: Complemental strand, 2303445 - 2303105
Alignment:
Q  14 tcatcaccacccatgacctccctaatctcctgcacaagcctcctttgaacgtccgggtacttcaatcaaatttgccataatccaatgcaaagcggtggaa 113  Q
    |||||||||||||| ||||||| |||||||| |||||||||||| || || || |||||||| || |||||| ||||||||||| |||||||  ||||||    
T  2303445 tcatcaccacccatcacctcccgaatctcctccacaagcctcctctgcacttctgggtactt-aaccaaattcgccataatccattgcaaagtagtggaa 2303347  T
Q  114 gtagtatctgtaccagcattcaaaaactccgaacaaagactaaccatttcatcctcagtcaacttctgtttttccattggcaactccaactccaaaagtg 213  Q
    |||||||| || ||| |||||| |||||| ||||||||| |||||||||||| |||| |||||||  |||| |||   |||||||||||||| | ||| |    
T  2303346 gtagtatccgtcccaccattcagaaactctgaacaaagattaaccatttcattctcactcaactttcgtttctcctcgggcaactccaactctagaagag 2303247  T
Q  214 tatccacgtaggaaacaacagtattagcattgttcaatttactctccttaacttgcttcctccctcttatcagctgaagcaaaacatcttcttgatctct 313  Q
    ||||  | || ||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||| |||| | |||||| ||||||||  |    
T  2303246 tatctgcatacgaaacaacagtattaacattgttcaatttactctccttaacttgtttcctcgctcttatcagcggaagtagaacatcctcttgatcctt 2303147  T
Q  314 acgcaacatcaacaattcctcccattttttacgcaacaaaat 355  Q
    | | ||| |||| || |||| ||||   ||||||||||||||    
T  2303146 aagtaacttcaaaaactccttccatcggttacgcaacaaaat 2303105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 14 - 355
Target Start/End: Complemental strand, 2293832 - 2293492
Alignment:
Q  14 tcatcaccacccatgacctccctaatctcctgcacaagcctcctttgaacgtccgggtacttcaatcaaatttgccataatccaatgcaaagcggtggaa 113  Q
    |||||||||||||| ||||||| |||||||| |||||||||||  || || || |||||||||| | | ||| ||||||||||| ||||||   ||||||    
T  2293832 tcatcaccacccatcacctcccgaatctcctccacaagcctcccctgcacttctgggtacttcact-acattcgccataatccactgcaaactagtggaa 2293734  T
Q  114 gtagtatctgtaccagcattcaaaaactccgaacaaagactaaccatttcatcctcagtcaacttctgtttttccattggcaactccaactccaaaagtg 213  Q
    ||||| ||||| ||| | ||||||||||| ||||||||| |||||||||||| |||| ||| |||| |||| |||   ||| |||| ||||| || || |    
T  2293733 gtagtgtctgtcccaccgttcaaaaactctgaacaaagattaaccatttcattctcactcagcttccgtttctcctcaggccactctaactctaagagag 2293634  T
Q  214 tatccacgtaggaaacaacagtattagcattgttcaatttactctccttaacttgcttcctccctcttatcagctgaagcaaaacatcttcttgatctct 313  Q
    ||||  | || |||||||||||||||  |||||||||||||||||||||||||||||||||  ||||||||||| |||||| |||||| ||||||||  |    
T  2293633 tatctgcatatgaaacaacagtattaatattgttcaatttactctccttaacttgcttccttgctcttatcagcggaagcagaacatcctcttgatcctt 2293534  T
Q  314 acgcaacatcaacaattcctcccattttttacgcaacaaaat 355  Q
    | | ||| |||| || ||||||||||  ||||||||||||||    
T  2293533 aagtaacttcaaaaactcctcccattggttacgcaacaaaat 2293492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 14 - 355
Target Start/End: Complemental strand, 2310163 - 2309823
Alignment:
Q  14 tcatcaccacccatgacctccctaatctcctgcacaagcctcctttgaacgtccgggtacttcaatcaaatttgccataatccaatgcaaagcggtggaa 113  Q
    |||||||||||||| ||||||| |||||||| |||||||||||  |  || || ||||||||||  || ||| ||||||||||| | ||||   ||||||    
T  2310163 tcatcaccacccatcacctcccgaatctcctccacaagcctccccttcacttctgggtacttcac-cacattcgccataatccactccaaactagtggaa 2310065  T
Q  114 gtagtatctgtaccagcattcaaaaactccgaacaaagactaaccatttcatcctcagtcaacttctgtttttccattggcaactccaactccaaaagtg 213  Q
    ||||| ||||| ||| | ||||||||||| ||||||||| |||||||||||| |||| ||| |||| |||| |||   ||| |||| ||||| ||||| |    
T  2310064 gtagtgtctgtcccaccgttcaaaaactctgaacaaagattaaccatttcattctcactcagcttccgtttctcctcaggctactctaactctaaaagag 2309965  T
Q  214 tatccacgtaggaaacaacagtattagcattgttcaatttactctccttaacttgcttcctccctcttatcagctgaagcaaaacatcttcttgatctct 313  Q
    ||||  | || ||||||||||||||| ||||||||||||||||||||||||||||||||||  ||||||||||| |||||| |||||| ||||||||  |    
T  2309964 tatctgcatatgaaacaacagtattaacattgttcaatttactctccttaacttgcttccttgctcttatcagcggaagcagaacatcctcttgatcctt 2309865  T
Q  314 acgcaacatcaacaattcctcccattttttacgcaacaaaat 355  Q
    | | ||| |||| || ||||||||||  |||||| |||||||    
T  2309864 aagtaacttcaaaaactcctcccattggttacgcgacaaaat 2309823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 120 - 355
Target Start/End: Complemental strand, 41126919 - 41126687
Alignment:
Q  120 tctgtaccagcattcaaaaactccgaacaaagactaaccatttcatcctcagtcaacttctgtttttccattggcaactccaactccaaaagtgtatcca 219  Q
    ||||| ||||||||||||||||| |||||||| || ||||||||||| ||| ||| |||  |||| |||   ||||||||||| |||||||| |||||      
T  41126919 tctgtgccagcattcaaaaactctgaacaaaggctgaccatttcatcttcactcagcttgcgtttctcctcgggcaactccaattccaaaagagtatctg 41126820  T
Q  220 cgtaggaaacaacagtattagcattgttcaatttactctccttaacttgcttcctccctcttatcagctgaagcaaaacatcttcttgatctctacgcaa 319  Q
    | |||||||||||| | ||    ||| ||||| | || |||||  ||| ||||||| ||||||| ||| |||| | |||||||||||||||| | |||||    
T  41126819 cataggaaacaacattgtt---tttgctcaatctcctttccttggcttccttcctcgctcttattagcggaagtagaacatcttcttgatcttttcgcaa 41126723  T
Q  320 catcaacaattcctcccattttttacgcaacaaaat 355  Q
    | |||||||||||||||||  |||||| || |||||    
T  41126722 cttcaacaattcctcccatcgtttacggaataaaat 41126687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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