View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6604_high_5 (Length: 385)
Name: NF6604_high_5
Description: NF6604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6604_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 185 - 372
Target Start/End: Original strand, 19224662 - 19224850
Alignment:
| Q |
185 |
cccatacatcaaaataatagttagacaacaatgtcactttgtaatcatatttacaaattaaaaaatggccattgagaacttctttcttgccggttgagtt |
284 |
Q |
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| T |
19224662 |
cccatacatcaaaataatagttagacaacgatgtcactttgtaatcatatttacaaattaaaaactggccattgaggacttctttcttgccagttgagtt |
19224761 |
T |
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| Q |
285 |
aactcctccaatagtaaacctttcaaaatttgggctaagatttaccctcaacaaattttaacttagc--tactattaacttgttgtttct |
372 |
Q |
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| T |
19224762 |
aactcctccaacagtaaacctttcaaaatttggg-taagatttaccctcaacagattttaacttagctatactattaacttgttgtttct |
19224850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 19224472 - 19224613
Alignment:
| Q |
1 |
gtaataattgtgtggattaattaacaaaatatggatcaagattggagggtgactcgatcgcttggagataatgtccaactcctctttcgactactcttat |
100 |
Q |
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| T |
19224472 |
gtaatagttgtgcggattaattaacaaaatatggagtaagattggagggtgactcgatcgcttggagacaatgtccaactcctctttcgactactcttat |
19224571 |
T |
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| Q |
101 |
tgataactctatgggaacgaacaaccttccttcgggtttagc |
142 |
Q |
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| T |
19224572 |
tgctaactctatgtgaacgaacaagcttccttcgggtttagc |
19224613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 37 - 102
Target Start/End: Complemental strand, 4269838 - 4269773
Alignment:
| Q |
37 |
caagattggagggtgactcgatcgcttggagataatgtccaactcctctttcgactactcttattg |
102 |
Q |
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| T |
4269838 |
caagattggaaggtgattcgattgcttggaggtaatgtccaactcctctttcgactactcttattg |
4269773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 37 - 115
Target Start/End: Original strand, 1583199 - 1583277
Alignment:
| Q |
37 |
caagattggagggtgactcgatcgcttggagataatgtccaactcctctttcgactactcttattgataactctatggg |
115 |
Q |
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| T |
1583199 |
caagattggagggtgaatcgatcgtttggagacaatgtctaactcctctttcggctactcttattgctgactccatggg |
1583277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 99
Target Start/End: Complemental strand, 22081517 - 22081455
Alignment:
| Q |
37 |
caagattggagggtgactcgatcgcttggagataatgtccaactcctctttcgactactctta |
99 |
Q |
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| T |
22081517 |
caagattagaggatgactcaatcgcttggaggcaatgttaaacttctctttcgactactctta |
22081455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 98
Target Start/End: Complemental strand, 1963038 - 1962977
Alignment:
| Q |
37 |
caagattggagggtgactcgatcgcttggagataatgtccaactcctctttcgactactctt |
98 |
Q |
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| T |
1963038 |
caagattggagggtgacgcaattgcttggagtcaatgttcaacacctttttcgactactctt |
1962977 |
T |
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