View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6604_high_7 (Length: 342)
Name: NF6604_high_7
Description: NF6604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6604_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 18 - 332
Target Start/End: Original strand, 7013226 - 7013553
Alignment:
| Q |
18 |
aggagtgggtgaaggagaaagagttttacattcatgtgaataatacttgtgtggtgaatcatgaatgtggtgtttatacacaggttgtgtggaagaaatc |
117 |
Q |
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| T |
7013226 |
aggagtgggtgaaggagaaagagttttacattcatgtgaataatacttgtgtggtgaatcatgaatgtggtgtttatacacaggttgtgtggaagaaatc |
7013325 |
T |
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| Q |
118 |
agcacaacttgggtgttcacaagctacttgtactggtaagaaggaagctagtttgactatttgtttctatgatccacctggtaatgttattggagagagt |
217 |
Q |
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| T |
7013326 |
agcacaacttgggtgttcacaagctacttgtactggtaagaaggaagctagtttgactatttgtttctatgatccacctggtaatgttattggagagagt |
7013425 |
T |
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| Q |
218 |
ccattttgac-------------tgatgatatgaataatatgatgtatttcaagtaatgttacttttttcttcaattaaattatgtaagtttaatgtaac |
304 |
Q |
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| T |
7013426 |
ccattttgactgatgataatgtatgatgatatgaataacatgatgtatttcaagtaatgttacttttttcttcaattaaattatgtaagtttaatgtaac |
7013525 |
T |
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| Q |
305 |
ctgtgctacagagatcaatatgcctatg |
332 |
Q |
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| T |
7013526 |
ctgtgctacagagatcaatatgcctatg |
7013553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 22 - 326
Target Start/End: Original strand, 7006846 - 7007175
Alignment:
| Q |
22 |
gtgggtgaaggagaaagagttttacattcatgtgaataatacttgtgtggtgaatcatgaat---gtggtgtttatacacaggttgtgtggaagaaatca |
118 |
Q |
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| T |
7006846 |
gtgggtgaggaagaaagagctttacattcatgtgaatgatacttgtgtg---aatcatgagttctgtcatgcttataggcaggttgtgtggaagaaatca |
7006942 |
T |
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| Q |
119 |
gcacaacttgggtgttcacaagctacttgtactggtaagaaggaagctagtttgactatttgtttctatgatccacctg------gtaatgttattggag |
212 |
Q |
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| T |
7006943 |
gtacaacttgggtgttcacaggctacttgtactgataagaaggaagctggtttgactatttgtttctatgatccacctgcacctcgtagagtcattggag |
7007042 |
T |
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| Q |
213 |
agagtccattttga-------------ctgatgatatgaataatatgatgtatttcaagtaatgttacttt------tttcttcaattaaattatgtaag |
293 |
Q |
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| T |
7007043 |
agagtccattttgattggtgtttatgtatgatgatatgaataatatgatgtatttcaagtaatgttatgttagttaggttcttgaattagattatgtaag |
7007142 |
T |
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| Q |
294 |
tttaatgtaacctgtgctacagagatcaatatg |
326 |
Q |
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| T |
7007143 |
tgtaatgtaaactatgctagagagatcaatatg |
7007175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 219
Target Start/End: Complemental strand, 33556515 - 33556317
Alignment:
| Q |
18 |
aggagtgggtgaaggagaaagagttttacattcat-gtgaataatacttgtgtggtgaatcatgaatgtggtgtttatacacaggttgtgtggaagaaat |
116 |
Q |
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|||| |||||||||||||| |||||||| | |||| |||| |||||| ||||| ||||||||| |||||||||||||| || ||||| |||| ||| |
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| T |
33556515 |
aggaatgggtgaaggagaaggagttttataatcatagtga-taatacatgtgttgtgaatcataggtgtggtgtttatactcaagttgtttggaggaaga |
33556417 |
T |
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| Q |
117 |
cagcacaacttgggtgttcacaagctacttgtactggtaagaaggaagctagtttgactatttgtttctatgatccacctggtaatgttattggagagag |
216 |
Q |
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| T |
33556416 |
gtgttgaacttgggtgtgctcaaactacttgt---ggtaaggaagatactagtttgagtatttgtttctattatccacctgggaattatgttggagagag |
33556320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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