View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6604_low_10 (Length: 347)
Name: NF6604_low_10
Description: NF6604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6604_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 20 - 333
Target Start/End: Complemental strand, 2524329 - 2524018
Alignment:
| Q |
20 |
ctggatttattacaattaatcttgtttccatcatatcattacactaatataagttgtccccttctaaaacaaacgaatatgagacaaagataattaattg |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2524329 |
ctggatttattacaattaatcttgtttccatcatatcattacactaatataagttgtccccttctaaaacaaacgaatatgagacaaagataattaattg |
2524230 |
T |
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| Q |
120 |
aatgtccacacaggactcaagagatgatgaatgagttttcaactgggtccaaactctaaataatgcccaaaaaaccaacatgattatcaatcatctcatg |
219 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2524229 |
aatgtccaca--ggactcaagagatgatgaatgagttttcaactgggtccaaactctaaataatgcccaaaaaaccaacatgattatcaatcatctcatg |
2524132 |
T |
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| Q |
220 |
taaatttgtagggtcaacttcccttagaaaaggtatcttggggttcaagtccaaatgtgacacaaagagacaaatttaatatcctaagttgtctccggca |
319 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2524131 |
taaatttgtagggtcaacttcccttagaagaggtatcttggggttcaagtccaaatgtgacacaaagagacaaatttaatatcctaagttgtctccggca |
2524032 |
T |
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| Q |
320 |
caaaggtatcagtg |
333 |
Q |
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|||||||||||||| |
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| T |
2524031 |
caaaggtatcagtg |
2524018 |
T |
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