View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6604_low_13 (Length: 279)
Name: NF6604_low_13
Description: NF6604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6604_low_13 |
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| [»] chr5 (6 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-135; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 19012238 - 19011961
Alignment:
| Q |
1 |
taacttaaaggaaaatgtataataattagttcatgtgtcacaatggatcaattatatataaatgaagaaacccatacttcaaatagattcgctgagggta |
100 |
Q |
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| T |
19012238 |
taacttaaaggaaaatatataataattagttcatgtgtcacaatggatcagttatatataaat-aagaaacccatacttcaaatagattcgctgagggta |
19012140 |
T |
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| Q |
101 |
tgtatttagtgatagtcccaagagctttaaccccttcaaattccttatagatatcacaaccttttactttgttaggttctggcacattcttatctttttc |
200 |
Q |
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| T |
19012139 |
tgtatttagtgatagtcccaagagctttaaccccttcaaatttcttatagatgtcacaaccttttactttgttaggttctggcacattcttatctttttc |
19012040 |
T |
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| Q |
201 |
aggattgtcacctggttgaacttcatttgcattctgtgcacaaaagtgagaataaaaatgtaaaacattgtccctaaaa |
279 |
Q |
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| T |
19012039 |
aggattgtcacttggttgaactccatttgcattctgtgcacaaaagtgagaataaaaatgtaaaacattgtccgtaaaa |
19011961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 18797525 - 18797258
Alignment:
| Q |
1 |
taacttaaaggaaaatgtataataattagttcatgtgtcacaatggatcaattatatataaatgaagaaacccatacttcaaatagattcgctgagggta |
100 |
Q |
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| T |
18797525 |
taacttaaaggagaatgtataataactagttcatatgtcacagttaatcaattatatatagatgaaagaatccgtacttcaaacagattcgctgagggca |
18797426 |
T |
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| Q |
101 |
tgtatttagtgatagtcccaagagctttaaccccttcaaattccttatagatatcacaaccttttactttgttaggttctggcacattcttatctttttc |
200 |
Q |
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| T |
18797425 |
tgaagttaataacagtcccaagaactttaacccctttaaattccttgtagatgtcacaacctattatttttctaggttctggcacactcttatctttttc |
18797326 |
T |
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| Q |
201 |
aggattgtcacctggttgaacttcatttgcattctgtgcacaaaagtgagaataaaaatgtaaaacattg |
270 |
Q |
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| T |
18797325 |
agggttgtcacttggttgaactctatttgcatcctgttcacaaa--tttgaataaaaatataaaacattg |
18797258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 18824681 - 18824414
Alignment:
| Q |
1 |
taacttaaaggaaaatgtataataattagttcatgtgtcacaatggatcaattatatataaatgaagaaacccatacttcaaatagattcgctgagggta |
100 |
Q |
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|||||||||||||| ||||| ||||| ||||||| ||||||||| ||||||||||||||||| ||| || |||||||||||| |||||||| ||||| | |
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| T |
18824681 |
taacttaaaggaaagtgtatcataatgagttcatatgtcacaattaatcaattatatataaataaaggaatccatacttcaaacagattcgccgagggca |
18824582 |
T |
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| Q |
101 |
tgtatttagtgatagtcccaagagctttaaccccttcaaattccttatagatatcacaaccttttactttgttaggttctggcacattcttatctttttc |
200 |
Q |
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| T |
18824581 |
tgtagttattaacagtcccacgaactttaacccctttgaattccttatagatgtcataacctattatttttttaagttctggcacactcttatcgttttc |
18824482 |
T |
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| Q |
201 |
aggattgtcacctggttgaacttcatttgcattctgtgcacaaaagtgagaataaaaatgtaaaacattg |
270 |
Q |
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||| |||| || |||||||||| |||||||| |||| |||||| || |||||||||| ||||| |||| |
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| T |
18824481 |
agggttgttacttggttgaactctatttgcatcctgttcacaaa--tgtgaataaaaatataaaatattg |
18824414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 17310702 - 17310923
Alignment:
| Q |
1 |
taacttaaaggaaaatgtataataattagttcatgtgtcacaatggatcaattatatataaatgaagaaacccatacttcaaatagattcgctgagggta |
100 |
Q |
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|||||||||| ||||| ||||||||||| | |||| ||||||| ||||| || ||| ||||||| ||| ||||| |||||||||||| ||||| | |
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| T |
17310702 |
taacttaaagaaaaatttataataattaatgcatgcatcacaattgatcattttcataaaaatgaaagaactcatacctcaaatagattcatggagggca |
17310801 |
T |
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| Q |
101 |
tgtatttagtgatagtcccaagagctttaaccccttcaaattccttatagatatcacaaccttttactttgttaggttctggcacattcttatctttttc |
200 |
Q |
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|||| ||| ||| |||||||| ||||||||||| |||||||||||| |||| ||| |||| ||| || ||||| || || |||| |||||||||||| |
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| T |
17310802 |
tgtagttattgacagtcccaaaagctttaaccctttcaaattccttgcagatgtcaagacctattatatttttaggctcgggaacatccttatctttttc |
17310901 |
T |
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| Q |
201 |
aggattgtcacctggttgaact |
222 |
Q |
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| T |
17310902 |
acgactgtcatttggttgaact |
17310923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 17279106 - 17279257
Alignment:
| Q |
1 |
taacttaaaggaaaatgtataataattagttcatgtgtcacaatggatcaattatatataaatgaagaaacccatacttcaaatagattcgctgagggta |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||| | |||| ||||||| ||||| || ||| ||||||| ||| ||||| |||||||||||| ||||| | |
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| T |
17279106 |
taacttaaagaaaaatgtataataattaatgcatgcatcacaattgatcattttcataaaaatgaaagaactcatacctcaaatagattcatggagggca |
17279205 |
T |
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| Q |
101 |
tgtatttagtgatagtcccaagagctttaaccccttcaaattccttatagat |
152 |
Q |
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|||| ||| ||| |||||||| ||||||||||| |||||||||||| ||||| |
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| T |
17279206 |
tgtagttattgacagtcccaaaagctttaaccctttcaaattccttgtagat |
17279257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 17294525 - 17294670
Alignment:
| Q |
1 |
taacttaaaggaaaatgtataataattagttcatgtgtcacaatggatcaattatatataaatgaagaaacccatacttcaaatagattcgctgagggta |
100 |
Q |
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|||||||||| ||||||||||||||||| | |||| ||||||| ||||| || ||| ||||||| ||| ||||| |||||||||||| ||||| | |
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| T |
17294525 |
taacttaaagaaaaatgtataataattaatgcatgcatcacaattgatcattttcataaaaatgaaagaactcatacctcaaatagattcatggagggca |
17294624 |
T |
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| Q |
101 |
tgtatttagtgatagtcccaagagctttaaccccttcaaattcctt |
146 |
Q |
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| T |
17294625 |
tgtagtttttgacagtcccaaaagctttaaccctttcaaattcctt |
17294670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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