View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6604_low_14 (Length: 256)
Name: NF6604_low_14
Description: NF6604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6604_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 37 - 239
Target Start/End: Original strand, 4680293 - 4680494
Alignment:
| Q |
37 |
catagtgaacaaaactattattcaattttggtctcatcattagtcgtgtgtcccagttattttctctttggacaataaacgtcagggtgggttgttttgt |
136 |
Q |
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| T |
4680293 |
catagtgaacaaa-ctattattcaattttggtctcatcattagtcgtgtgtcccagttattttctctttggacaataaacgtcagggtgggttgttttgt |
4680391 |
T |
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| Q |
137 |
tgtaacaatagacaagttttgtgtaatctaatgtattgatttgtacaatcaacttttattcttgagccatacatcctttgtttctttaaccttcaagtag |
236 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4680392 |
tgtaacaatagacaagttttgtgtaatctaatgtattgatttgtacaatcaacttttattcttgagccatacatcctttgtttctttaaccttcaagtag |
4680491 |
T |
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| Q |
237 |
ttg |
239 |
Q |
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||| |
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| T |
4680492 |
ttg |
4680494 |
T |
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