View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6604_low_2 (Length: 669)

Name: NF6604_low_2
Description: NF6604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6604_low_2
NF6604_low_2
[»] chr7 (1 HSPs)
chr7 (1-651)||(47619815-47620459)


Alignment Details
Target: chr7 (Bit Score: 612; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 612; E-Value: 0
Query Start/End: Original strand, 1 - 651
Target Start/End: Complemental strand, 47620459 - 47619815
Alignment:
Q  1 catgaaggatataaatatttttgggcactgtttatcttagaaaatacggttcatccaaagcatactctacaatttgaacaagattttatgaccccaaatg 100  Q
    ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  47620459 catgaaggatatagatatttttaggcactgtttatcttagaaaatacggttcatccaaagcatactctacaatttgaacaagattttataaccccaaatg 47620360  T
Q  101 tagcatcaccttccgaatttaggtagccacaacatagaatagaagaatagattgtagaatttaaatttacttcaaaacaatgcttattatacaactcact 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47620359 tagcatcaccttccgaatttaggtagccacaacatagaatagaagaatagattgtagaatttaaatttacttcaaaacaatgcttattatacaactcact 47620260  T
Q  201 ctatctaaattaattaacgcaggtgcgtgtattatgctgcaggtagttacaaaaaatgaatggtgagaatatcaaacaccaaattaactgaatcccttat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47620259 ctatctaaattaattaacgcaggtgcgtgtattatgctgcaggtagttacaaaaaatgaatggtgagaatatcaaacaccaaattaactgaatcccttat 47620160  T
Q  301 tattagacttctatttaattaaacataccattccagacattttcacctttcattctttatttcaattactcttcccttcacggcgacgcggcacggcgag 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47620159 tattagacttctatttaattaaacataccattccagacattttcacctttcattctttatttcaattactcttcccttcacggcgacgcggcacggcgag 47620060  T
Q  401 gcagcttcctaactgcctcggctgtcaccatcaccatcaccaccattactaattaatcatcaaaattcataattaatattatgagtagcgaggaaatagt 500  Q
    ||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47620059 gcagcttcctaactgcctcggctgtcaccatc------accaccattactaattaatcatcaaaattcataattaatattatgagtagcgaggaaatagt 47619966  T
Q  501 gttacagggaggaggagtctgcgaaaacgagttttcagatcaagaggaagagttgcaacaggaacattctgatcagaaggccgaggcattggcgtttaag 600  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47619965 gttacagggaggaggagtctgcgaaaacgagttttcagatcaggaggaagagttgcaacaggaacattctgatcagaaggccgaggcattggcgtttaag 47619866  T
Q  601 aaaaggaaacgtctaacaaagcaactatcaatgtgtggaacaccaggagac 651  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47619865 aaaaggaaacgtctaacaaagcaactatcaatgtgtggaacaccaggagac 47619815  T

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