View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6604_low_22 (Length: 239)

Name: NF6604_low_22
Description: NF6604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6604_low_22
NF6604_low_22
[»] chr5 (2 HSPs)
chr5 (119-239)||(19011536-19011656)
chr5 (14-48)||(19011499-19011533)
[»] chr2 (3 HSPs)
chr2 (15-111)||(40876972-40877069)
chr2 (70-159)||(38134112-38134200)
chr2 (31-111)||(36506919-36506999)
[»] chr1 (2 HSPs)
chr1 (16-111)||(1240413-1240509)
chr1 (31-111)||(8246767-8246847)
[»] chr6 (4 HSPs)
chr6 (119-170)||(32331535-32331586)
chr6 (19-111)||(34540907-34541000)
chr6 (31-111)||(9815719-9815799)
chr6 (31-111)||(12174322-12174402)
[»] chr8 (2 HSPs)
chr8 (31-111)||(13580405-13580485)
chr8 (119-191)||(9052966-9053038)
[»] chr4 (2 HSPs)
chr4 (31-111)||(23870049-23870129)
chr4 (123-159)||(7540403-7540439)
[»] chr3 (2 HSPs)
chr3 (31-159)||(33510096-33510224)
chr3 (145-197)||(47000827-47000879)
[»] chr7 (2 HSPs)
chr7 (31-109)||(32982337-32982415)
chr7 (31-111)||(26914390-26914470)


Alignment Details
Target: chr5 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 119 - 239
Target Start/End: Original strand, 19011536 - 19011656
Alignment:
Q  119 agagaaccttatttatgaataaatcctttgcaacaaaaaatatgagaagaaatggatttaaataataaaaagggcacaacattattgatttacccatagc 218  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  19011536 agagaaccttatttatgaataaatcatttgcaacaaaaaatatgagaagaaatggatttaaataataaaaagggtacaacattattgatttacccatagc 19011635  T
Q  219 acttaaagtcttagtaggatc 239  Q
    || ||||||||| ||||||||    
T  19011636 acctaaagtctttgtaggatc 19011656  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 48
Target Start/End: Original strand, 19011499 - 19011533
Alignment:
Q  14 cattttttagggacactaaattattatttttactt 48  Q
    |||||||||||||||||||||||||| ||||||||    
T  19011499 cattttttagggacactaaattattaattttactt 19011533  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 111
Target Start/End: Complemental strand, 40877069 - 40876972
Alignment:
Q  15 attttttagggacactaaa-ttattatttttacttagtactttgaagtatatacacatatttgtttttaactcgattcgattaactctattgaaaata 111  Q
    ||||||||||||||| ||| ||||||||||||||| ||| || | | |||||| | |||||| ||||||||| | || |||||| |||||||||||||    
T  40877069 attttttagggacaccaaaattattatttttacttggtagttagtattatataaatatatttctttttaacttgtttggattaattctattgaaaata 40876972  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 159
Target Start/End: Original strand, 38134112 - 38134200
Alignment:
Q  70 atatttgtttttaactcgattcgattaactctattgaaaatannnnnnnagagaaccttatttatgaataaatcctttgcaacaaaaaat 159  Q
    |||||| |||||||||||||| |||||| | |||| ||||||       ||||||||||||||| |||| |||| |||||||||||||||    
T  38134112 atatttctttttaactcgatttgattaattatattaaaaatatttttt-agagaaccttatttacgaatgaatcttttgcaacaaaaaat 38134200  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 111
Target Start/End: Complemental strand, 36506999 - 36506919
Alignment:
Q  31 aaattattatttttacttagtactttgaagtatatacacatatttgtttttaactcgattcgattaactctattgaaaata 111  Q
    |||| |||||||||| |||||| || | | |||||| | |||||||||||||||||  || |||| | |||||||||||||    
T  36506999 aaatcattatttttaattagtagttagtattatatagaaatatttgtttttaactctctttgattgattctattgaaaata 36506919  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 111
Target Start/End: Original strand, 1240413 - 1240509
Alignment:
Q  16 ttttttagggacactaaa-ttattatttttacttagtactttgaagtatatacacatatttgtttttaactcgattcgattaactctattgaaaata 111  Q
    |||||||||| ||||||| ||||||||||||||||||| || | | |||||| | |||||| |||||||  || || |||||| |||||||||||||    
T  1240413 ttttttaggggcactaaaattattatttttacttagtagttagtactatataaatatatttctttttaatccgctttgattaattctattgaaaata 1240509  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 111
Target Start/End: Complemental strand, 8246847 - 8246767
Alignment:
Q  31 aaattattatttttacttagtactttgaagtatatacacatatttgtttttaactcgattcgattaactctattgaaaata 111  Q
    ||||||||||||||||||| || || | | |||||| | |||||| ||||||| | |||| |||||| |||||||||||||    
T  8246847 aaattattatttttacttaatagttagtactatatagatatatttctttttaatttgatttgattaattctattgaaaata 8246767  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 170
Target Start/End: Complemental strand, 32331586 - 32331535
Alignment:
Q  119 agagaaccttatttatgaataaatcctttgcaacaaaaaatatgagaagaaa 170  Q
    |||||| ||||||||| |||||||| ||||||||||||||||| ||||||||    
T  32331586 agagaatcttatttataaataaatcttttgcaacaaaaaatataagaagaaa 32331535  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 34541000 - 34540907
Alignment:
Q  19 tttagggacactaaa-ttattatttttacttagtactttgaagtatatacacatatttgtttttaactcgattcgattaactctattgaaaata 111  Q
    ||||||||||||||| ||||||||||||||||||| ||   | |||||| | |||||| || |||||||| || |||||  |||||||||||||    
T  34541000 tttagggacactaaaattattatttttacttagtaattaatactatatagatatatttcttattaactcgttttgattagttctattgaaaata 34540907  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 111
Target Start/End: Complemental strand, 9815799 - 9815719
Alignment:
Q  31 aaattattatttttacttagtactttgaagtatatacacatatttgtttttaactcgattcgattaactctattgaaaata 111  Q
    |||||||||||||||||||||| ||   | |||||| | |||||| ||||||| ||| || |||||||| |||||||||||    
T  9815799 aaattattatttttacttagtagttaatactatatagatatatttctttttaattcgctttgattaactttattgaaaata 9815719  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 111
Target Start/End: Original strand, 12174322 - 12174402
Alignment:
Q  31 aaattattatttttacttagtactttgaagtatatacacatatttgtttttaactcgattcgattaactctattgaaaata 111  Q
    |||||||||||||||||||||| || | | |||||| | |||||| ||||||| ||| || |||||| | |||| ||||||    
T  12174322 aaattattatttttacttagtagttagtactatatagatatatttctttttaattcgttttgattaattatattaaaaata 12174402  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 111
Target Start/End: Complemental strand, 13580485 - 13580405
Alignment:
Q  31 aaattattatttttacttagtactttgaagtatatacacatatttgtttttaactcgattcgattaactctattgaaaata 111  Q
    ||||||||||||||||||| || || | | |||||| | |||||| ||||||| ||| || |||||| |||||||||||||    
T  13580485 aaattattatttttacttaatagttagtattatataaatatatttctttttaattcgctttgattaattctattgaaaata 13580405  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 191
Target Start/End: Original strand, 9052966 - 9053038
Alignment:
Q  119 agagaaccttatttatgaataaatcctttgcaacaaaaaatatgagaagaaatggatttaaataataaaaagg 191  Q
    ||||||||||  |||||||| | || ||| ||||||||||| ||| |||||||  ||||||||||| ||||||    
T  9052966 agagaaccttgattatgaatgattcttttacaacaaaaaatgtgaaaagaaatacatttaaataattaaaagg 9053038  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 111
Target Start/End: Original strand, 23870049 - 23870129
Alignment:
Q  31 aaattattatttttacttagtactttgaagtatatacacatatttgtttttaactcgattcgattaactctattgaaaata 111  Q
    |||||||||||||||||||||| || | | |||||| | |||| | ||||||| ||| || |||||| |||||||||||||    
T  23870049 aaattattatttttacttagtagttagtactatatagatatatatttttttaattcgttttgattaattctattgaaaata 23870129  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 159
Target Start/End: Complemental strand, 7540439 - 7540403
Alignment:
Q  123 aaccttatttatgaataaatcctttgcaacaaaaaat 159  Q
    |||||||||||||||| |||| |||||||||||||||    
T  7540439 aaccttatttatgaatgaatcttttgcaacaaaaaat 7540403  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 159
Target Start/End: Complemental strand, 33510224 - 33510096
Alignment:
Q  31 aaattattatttttacttagtactttgaagtatatacacatatttgtttttaactcgattcgattaactctattgaaaatannnnnnnagagaaccttat 130  Q
    |||||||||||||||||||||| || |   || ||| | |||||| ||||||| ||| || |||||| || ||||||||||       ||||||| |||     
T  33510224 aaattattatttttacttagtagttagtgctacatagatatatttctttttaattcgttttgattaattccattgaaaatatatttttagagaactttaa 33510125  T
Q  131 ttatgaataaatcctttgcaacaaaaaat 159  Q
    |||| ||| |||| |||||||||||||||    
T  33510124 ttataaatgaatcttttgcaacaaaaaat 33510096  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 197
Target Start/End: Complemental strand, 47000879 - 47000827
Alignment:
Q  145 tttgcaacaaaaaatatgagaagaaatggatttaaataataaaaagggcacaa 197  Q
    ||||||||||||||||| ||||||||   |||||||| || ||||||||||||    
T  47000879 tttgcaacaaaaaatataagaagaaaaatatttaaatgattaaaagggcacaa 47000827  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 109
Target Start/End: Original strand, 32982337 - 32982415
Alignment:
Q  31 aaattattatttttacttagtactttgaagtatatacacatatttgtttttaactcgattcgattaactctattgaaaa 109  Q
    |||||||||||||||||| ||| || | ||  |||||| |||||| ||||||||||  || |||||| |||||||||||    
T  32982337 aaattattatttttacttggtagttaggagagtatacatatatttttttttaactcattttgattaattctattgaaaa 32982415  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 111
Target Start/End: Complemental strand, 26914470 - 26914390
Alignment:
Q  31 aaattattatttttacttagtactttgaagtatatacacatatttgtttttaactcgattcgattaactctattgaaaata 111  Q
    |||||||||||||||||||||| || | | |||||||| || |||  |||||| ||| || |||||| | |||||||||||    
T  26914470 aaattattatttttacttagtagttagtattatatacatatgtttacttttaattcgttttgattaattatattgaaaata 26914390  T

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