View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6604_low_4 (Length: 457)

Name: NF6604_low_4
Description: NF6604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6604_low_4
NF6604_low_4
[»] chr1 (40 HSPs)
chr1 (1-145)||(12728106-12728250)
chr1 (206-316)||(12728309-12728419)
chr1 (370-422)||(12728450-12728502)
chr1 (1-52)||(20054517-20054568)
chr1 (1-52)||(20054973-20055024)
chr1 (1-52)||(20055429-20055480)
chr1 (1-52)||(20055885-20055936)
chr1 (1-52)||(20056341-20056392)
chr1 (1-52)||(20057244-20057295)
chr1 (1-52)||(20057700-20057751)
chr1 (1-52)||(20845642-20845693)
chr1 (1-53)||(43057503-43057555)
chr1 (1-49)||(52250320-52250368)
chr1 (1-49)||(52250657-52250705)
chr1 (1-49)||(52250994-52251042)
chr1 (1-52)||(16451914-16451965)
chr1 (1-52)||(16461067-16461118)
chr1 (1-52)||(20054061-20054112)
chr1 (1-52)||(20056797-20056848)
chr1 (1-52)||(38341020-38341071)
chr1 (1-48)||(51372859-51372906)
chr1 (1-51)||(20060322-20060372)
chr1 (1-92)||(43057010-43057097)
chr1 (11-55)||(35009974-35010018)
chr1 (1-52)||(50002266-50002317)
chr1 (1-54)||(2635038-2635091)
chr1 (12-97)||(2634591-2634672)
chr1 (4-93)||(12883641-12883726)
chr1 (4-92)||(7548208-7548292)
chr1 (1-52)||(23180844-23180895)
chr1 (1-52)||(35759589-35759640)
chr1 (1-52)||(46693716-46693767)
chr1 (5-52)||(50003056-50003103)
chr1 (4-52)||(35760895-35760943)
chr1 (4-35)||(2328432-2328463)
chr1 (1-36)||(20061188-20061223)
chr1 (1-52)||(50002688-50002739)
chr1 (11-90)||(30872897-30872972)
chr1 (1-51)||(31822645-31822695)
chr1 (11-51)||(10820718-10820758)
[»] chr4 (39 HSPs)
chr4 (5-73)||(23942747-23942811)
chr4 (4-55)||(23943214-23943265)
chr4 (4-55)||(1645721-1645772)
chr4 (1-52)||(12691974-12692025)
chr4 (1-52)||(35871741-35871792)
chr4 (1-52)||(50814800-50814851)
chr4 (1-54)||(50398511-50398564)
chr4 (1-54)||(50398966-50399019)
chr4 (1-54)||(51331254-51331307)
chr4 (1-89)||(13613840-13613924)
chr4 (1-48)||(15306070-15306117)
chr4 (4-55)||(29628640-29628691)
chr4 (1-52)||(44471300-44471351)
chr4 (1-52)||(49998750-49998801)
chr4 (11-52)||(44470850-44470891)
chr4 (11-55)||(53996087-53996131)
chr4 (1-52)||(7678597-7678648)
chr4 (13-52)||(24628952-24628991)
chr4 (14-55)||(3169333-3169374)
chr4 (3-52)||(11828460-11828509)
chr4 (15-52)||(14571663-14571700)
chr4 (12-73)||(14351920-14351977)
chr4 (11-55)||(21067855-21067899)
chr4 (1-52)||(23350258-23350309)
chr4 (13-52)||(24629408-24629447)
chr4 (1-44)||(27029391-27029434)
chr4 (20-52)||(8467783-8467815)
chr4 (12-52)||(17029455-17029495)
chr4 (3-55)||(21067398-21067450)
chr4 (15-46)||(14571702-14571733)
chr4 (17-52)||(27578261-27578296)
chr4 (14-52)||(27578884-27578922)
chr4 (1-55)||(31817824-31817878)
chr4 (11-52)||(20306139-20306180)
chr4 (11-52)||(21220306-21220347)
chr4 (4-49)||(27026619-27026664)
chr4 (15-48)||(27578436-27578469)
chr4 (1-33)||(4127431-4127463)
chr4 (12-52)||(17028999-17029039)
[»] chr2 (28 HSPs)
chr2 (4-55)||(16379054-16379105)
chr2 (1-52)||(8256640-8256691)
chr2 (1-52)||(11388301-11388352)
chr2 (1-52)||(24818440-24818491)
chr2 (1-52)||(41754403-41754454)
chr2 (4-54)||(16379510-16379560)
chr2 (1-55)||(33174617-33174671)
chr2 (4-53)||(25434036-25434085)
chr2 (1-49)||(29804796-29804844)
chr2 (1-52)||(30966804-30966855)
chr2 (4-54)||(1912641-1912691)
chr2 (1-52)||(5399798-5399849)
chr2 (1-52)||(25337978-25338029)
chr2 (1-52)||(32377697-32377748)
chr2 (1-52)||(33771115-33771166)
chr2 (4-55)||(38898890-38898941)
chr2 (1-51)||(30966348-30966398)
chr2 (12-52)||(11394658-11394698)
chr2 (14-90)||(15620025-15620097)
chr2 (14-90)||(15639861-15639933)
chr2 (13-89)||(27882874-27882946)
chr2 (4-54)||(33175075-33175124)
chr2 (4-51)||(83134-83181)
chr2 (1-48)||(29259605-29259652)
chr2 (15-50)||(30963703-30963738)
chr2 (15-48)||(30961868-30961901)
chr2 (19-52)||(32377888-32377921)
chr2 (16-52)||(30963244-30963280)
[»] scaffold0499 (2 HSPs)
scaffold0499 (1-52)||(2032-2083)
scaffold0499 (100-142)||(1902-1944)
[»] scaffold0277 (1 HSPs)
scaffold0277 (1-52)||(14683-14734)
[»] scaffold0243 (1 HSPs)
scaffold0243 (1-52)||(1334-1385)
[»] scaffold0168 (1 HSPs)
scaffold0168 (1-52)||(2856-2907)
[»] scaffold0024 (1 HSPs)
scaffold0024 (1-52)||(105834-105885)
[»] scaffold0022 (4 HSPs)
scaffold0022 (1-52)||(163115-163166)
scaffold0022 (1-52)||(162659-162710)
scaffold0022 (1-52)||(163185-163236)
scaffold0022 (6-89)||(69763-69842)
[»] scaffold0020 (1 HSPs)
scaffold0020 (1-52)||(107444-107495)
[»] scaffold0018 (1 HSPs)
scaffold0018 (1-52)||(10414-10465)
[»] chr8 (33 HSPs)
chr8 (1-52)||(12827235-12827286)
chr8 (1-52)||(22026493-22026544)
chr8 (1-52)||(25144886-25144937)
chr8 (4-91)||(28453455-28453538)
chr8 (6-55)||(32292516-32292565)
chr8 (1-49)||(10844599-10844647)
chr8 (4-55)||(2044175-2044226)
chr8 (4-55)||(6464888-6464939)
chr8 (4-55)||(8080320-8080371)
chr8 (1-52)||(17103195-17103246)
chr8 (1-52)||(22548530-22548581)
chr8 (1-52)||(22548976-22549027)
chr8 (1-48)||(25148081-25148128)
chr8 (1-52)||(27022319-27022370)
chr8 (1-52)||(27926013-27926064)
chr8 (1-47)||(10844997-10845043)
chr8 (1-52)||(12100805-12100856)
chr8 (1-52)||(25147650-25147701)
chr8 (1-48)||(31283636-31283683)
chr8 (4-55)||(33852236-33852287)
chr8 (1-52)||(34308916-34308967)
chr8 (4-55)||(41913087-41913138)
chr8 (5-54)||(21316088-21316137)
chr8 (1-97)||(15818956-15819047)
chr8 (1-52)||(34308460-34308511)
chr8 (1-52)||(41659086-41659137)
chr8 (100-142)||(17103335-17103377)
chr8 (105-142)||(10844466-10844503)
chr8 (4-48)||(3745218-3745262)
chr8 (11-55)||(10729747-10729791)
chr8 (4-55)||(25307881-25307932)
chr8 (6-102)||(27819181-27819273)
chr8 (11-55)||(15567534-15567578)
[»] chr7 (36 HSPs)
chr7 (4-55)||(679933-679984)
chr7 (1-52)||(2465847-2465898)
chr7 (1-52)||(2466038-2466089)
chr7 (1-52)||(2941738-2941789)
chr7 (1-52)||(13125117-13125168)
chr7 (1-52)||(28495968-28496019)
chr7 (1-52)||(34405572-34405623)
chr7 (4-55)||(42515209-42515260)
chr7 (1-52)||(42515658-42515709)
chr7 (1-52)||(43776271-43776322)
chr7 (1-54)||(6719053-6719106)
chr7 (4-52)||(28495589-28495637)
chr7 (1-52)||(7646459-7646510)
chr7 (1-52)||(7646529-7646580)
chr7 (1-52)||(9125073-9125124)
chr7 (1-89)||(9623321-9623405)
chr7 (1-52)||(13122486-13122537)
chr7 (1-97)||(25182475-25182567)
chr7 (4-55)||(35474099-35474150)
chr7 (1-52)||(36422366-36422417)
chr7 (12-55)||(46425866-46425909)
chr7 (1-52)||(2189258-2189309)
chr7 (11-73)||(29038984-29039042)
chr7 (11-55)||(35527099-35527143)
chr7 (1-52)||(2193370-2193421)
chr7 (4-55)||(2611630-2611681)
chr7 (19-90)||(22529182-22529249)
chr7 (1-55)||(26421738-26421792)
chr7 (15-48)||(5406573-5406606)
chr7 (12-48)||(6747583-6747619)
chr7 (4-55)||(3305326-3305377)
chr7 (1-48)||(18833400-18833447)
chr7 (108-142)||(7646676-7646710)
chr7 (1-51)||(26421287-26421337)
chr7 (1-43)||(31406574-31406616)
chr7 (1-49)||(20966165-20966213)
[»] chr6 (31 HSPs)
chr6 (1-52)||(9352176-9352227)
chr6 (4-55)||(11062402-11062453)
chr6 (1-52)||(16520082-16520133)
chr6 (1-52)||(28780224-28780275)
chr6 (4-55)||(2720541-2720592)
chr6 (1-52)||(13492446-13492497)
chr6 (1-48)||(13492903-13492950)
chr6 (1-52)||(17027512-17027563)
chr6 (4-55)||(17851035-17851086)
chr6 (4-55)||(20126160-20126211)
chr6 (1-52)||(20850435-20850486)
chr6 (1-54)||(6330891-6330944)
chr6 (5-49)||(2890823-2890867)
chr6 (1-52)||(7911992-7912043)
chr6 (1-52)||(7912424-7912475)
chr6 (1-52)||(13191494-13191545)
chr6 (4-55)||(17851491-17851542)
chr6 (11-89)||(33774950-33775024)
chr6 (11-55)||(21311639-21311683)
chr6 (1-40)||(15929696-15929735)
chr6 (1-52)||(17731090-17731141)
chr6 (5-52)||(20896669-20896716)
chr6 (1-43)||(2681206-2681248)
chr6 (4-55)||(2891271-2891322)
chr6 (1-52)||(9440290-9440341)
chr6 (12-55)||(14771697-14771740)
chr6 (1-52)||(23986298-23986349)
chr6 (1-55)||(20732692-20732746)
chr6 (22-55)||(3652658-3652691)
chr6 (11-52)||(12194452-12194493)
chr6 (4-52)||(21312088-21312136)
[»] chr5 (29 HSPs)
chr5 (1-52)||(2193930-2193981)
chr5 (1-52)||(2474073-2474124)
chr5 (1-52)||(2474519-2474570)
chr5 (1-52)||(8642015-8642066)
chr5 (4-92)||(29680052-29680136)
chr5 (4-55)||(39147056-39147107)
chr5 (1-52)||(189182-189233)
chr5 (4-92)||(1822023-1822107)
chr5 (4-55)||(10927381-10927432)
chr5 (1-52)||(34371726-34371777)
chr5 (1-52)||(34372182-34372233)
chr5 (1-52)||(42788627-42788678)
chr5 (2-52)||(17445436-17445486)
chr5 (4-102)||(27646770-27646864)
chr5 (11-55)||(10926924-10926968)
chr5 (1-52)||(3886582-3886633)
chr5 (1-52)||(3887038-3887089)
chr5 (1-52)||(8391303-8391354)
chr5 (1-52)||(21886127-21886178)
chr5 (1-48)||(11757266-11757313)
chr5 (1-52)||(18304545-18304596)
chr5 (4-55)||(20039453-20039504)
chr5 (1-52)||(4102910-4102961)
chr5 (5-52)||(20858522-20858569)
chr5 (1-52)||(22557083-22557134)
chr5 (1-48)||(34867904-34867951)
chr5 (11-49)||(15512996-15513034)
chr5 (100-142)||(17445306-17445348)
chr5 (15-52)||(30684537-30684574)
[»] chr3 (39 HSPs)
chr3 (4-55)||(2911212-2911263)
chr3 (1-52)||(13150535-13150586)
chr3 (4-55)||(25238662-25238713)
chr3 (1-52)||(28561860-28561911)
chr3 (1-52)||(31284257-31284308)
chr3 (5-55)||(20885095-20885145)
chr3 (4-73)||(4067324-4067389)
chr3 (4-52)||(50347863-50347911)
chr3 (1-52)||(8067394-8067445)
chr3 (1-52)||(11180015-11180066)
chr3 (5-52)||(13150080-13150127)
chr3 (1-52)||(14814063-14814114)
chr3 (1-52)||(16811495-16811546)
chr3 (1-52)||(32227614-32227665)
chr3 (12-55)||(37045160-37045203)
chr3 (1-51)||(14820268-14820318)
chr3 (4-93)||(30529804-30529888)
chr3 (4-52)||(32227202-32227250)
chr3 (12-52)||(32386715-32386755)
chr3 (4-52)||(39641054-39641102)
chr3 (4-55)||(25230226-25230277)
chr3 (4-55)||(25230683-25230734)
chr3 (4-55)||(25237813-25237864)
chr3 (4-55)||(25238270-25238321)
chr3 (1-48)||(27187315-27187362)
chr3 (1-52)||(39653278-39653329)
chr3 (1-55)||(25802526-25802580)
chr3 (4-55)||(25248228-25248279)
chr3 (1-53)||(7493995-7494047)
chr3 (1-49)||(16811039-16811087)
chr3 (4-40)||(25239070-25239106)
chr3 (1-49)||(41472414-41472462)
chr3 (1-89)||(25802952-25803036)
chr3 (1-52)||(29224438-29224489)
chr3 (1-55)||(7477305-7477359)
chr3 (15-51)||(15381258-15381294)
chr3 (15-51)||(15396493-15396529)
chr3 (15-51)||(15410629-15410665)
chr3 (11-51)||(41474121-41474161)
[»] scaffold0389 (1 HSPs)
scaffold0389 (1-48)||(13518-13565)
[»] scaffold0322 (1 HSPs)
scaffold0322 (1-52)||(19080-19131)
[»] scaffold0047 (2 HSPs)
scaffold0047 (12-55)||(18113-18156)
scaffold0047 (16-54)||(17577-17615)
[»] scaffold0002 (1 HSPs)
scaffold0002 (5-52)||(154875-154922)
[»] scaffold0333 (2 HSPs)
scaffold0333 (1-52)||(5135-5186)
scaffold0333 (1-52)||(4675-4726)
[»] scaffold0005 (2 HSPs)
scaffold0005 (15-52)||(245676-245713)
scaffold0005 (15-46)||(245643-245674)
[»] scaffold0557 (1 HSPs)
scaffold0557 (4-55)||(2222-2273)
[»] scaffold0040 (3 HSPs)
scaffold0040 (1-52)||(2191-2242)
scaffold0040 (100-144)||(2059-2103)
scaffold0040 (105-142)||(2517-2554)
[»] scaffold0137 (1 HSPs)
scaffold0137 (15-52)||(7070-7107)
[»] scaffold0217 (1 HSPs)
scaffold0217 (1-52)||(424-475)


Alignment Details
Target: chr1 (Bit Score: 133; Significance: 5e-69; HSPs: 40)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 12728106 - 12728250
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggagtagctagtctttggatggatggccttctgagaagtttcccaaaaaacg 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  12728106 ttcggtagcacattccataagaactccacagttaagcatgcttgacttggagtagctagtctttggatgggtggccttctgagaagtttcccaaaaaacg 12728205  T
Q  101 tggagtcagtcgacaatcctaaaagtcgtctgagatgttacatct 145  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  12728206 tggagtcagtcgacaatcctgaaagtcgtctgagatgttacatct 12728250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 206 - 316
Target Start/End: Original strand, 12728309 - 12728419
Alignment:
Q  206 gcacctaaatagtgcatttaagtattgtccaaaatgagaaagacataacctaacttgagcatttatttatgtgaagtgtgactcaagtaagacagtctga 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12728309 gcacctaaatagtgcatttaagtattgtccaaaatgagaaagacataacctaacttgagcatttatttatgtgaagtgtgactcaagtaagacagtctga 12728408  T
Q  306 aggactttaag 316  Q
    |||||||||||    
T  12728409 aggactttaag 12728419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 370 - 422
Target Start/End: Original strand, 12728450 - 12728502
Alignment:
Q  370 agtttgctttaggctgcaaacaaaaagcatgcctaaacctaatatattttgtg 422  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12728450 agtttgctttaggctgcaaacaaaaagcatgcctaaacctaatatattttgtg 12728502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 20054568 - 20054517
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  20054568 ttcggtagctcattccataagaactccacagttaagcgtgcttgacttggag 20054517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 20055024 - 20054973
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  20055024 ttcggtagctcattccataagaactccacagttaagcgtgcttgacttggag 20054973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 20055480 - 20055429
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  20055480 ttcggtagctcattccataagaactccacagttaagcgtgcttgacttggag 20055429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 20055936 - 20055885
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  20055936 ttcggtagctcattccataagaactccacagttaagcgtgcttgacttggag 20055885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 20056392 - 20056341
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  20056392 ttcggtagctcattccataagaactccacagttaagcgtgcttgacttggag 20056341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 20057295 - 20057244
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  20057295 ttcggtagctcattccataagaactccacagttaagcgtgcttgacttggag 20057244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 20057751 - 20057700
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  20057751 ttcggtagctcattccataagaactccacagttaagcgtgcttgacttggag 20057700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 20845693 - 20845642
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  20845693 ttcggtagctcattccataagaactccacagttaagcgtgcttgacttggag 20845642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 43057555 - 43057503
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggagt 53  Q
    ||||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  43057555 ttcggtagcccattccataagaactccacagttaagcgtgattgacttggagt 43057503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 52250320 - 52250368
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttg 49  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  52250320 ttcggtagctcattccataagaactccacagttaagcgtgcttgacttg 52250368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 52250657 - 52250705
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttg 49  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  52250657 ttcggtagctcattccataagaactccacagttaagcgtgcttgacttg 52250705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 52250994 - 52251042
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttg 49  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  52250994 ttcggtagctcattccataagaactccacagttaagcgtgcttgacttg 52251042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 16451965 - 16451914
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  16451965 ttcggtagttcattccataagaactccacagttaagcgtgcttgacttggag 16451914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 16461118 - 16461067
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  16461118 ttcggtagttcattccataagaactccacagttaagcgtgcttgacttggag 16461067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 20054112 - 20054061
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  20054112 ttcggtagctcattccataagaactccacagttaagcgtgcttgactaggag 20054061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 20056848 - 20056797
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||||||||    
T  20056848 ttcggtagctcattccataagaactccacagttaagcgtgtttgacttggag 20056797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 38341020 - 38341071
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  38341020 ttcggtagctcattccataagaacttcacagttaagcgtgcttgacttggag 38341071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 51372906 - 51372859
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgactt 48  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  51372906 ttcggtagctcattccataagaactccacagttaagcgtgcttgactt 51372859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 20060372 - 20060322
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttgga 51  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  20060372 ttcggtagctcattccataagaactccacagttaagtgtgcttgacttgga 20060322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 43057097 - 43057010
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggagtagctagtctttggatggatggccttctgagaagtttccc 92  Q
    ||||||||| |||||||||||||||||||||||||||||| ||||||| |||    | |||||||||||| || ||| ||| ||||||||||    
T  43057097 ttcggtagcccattccataagaactccacagttaagcgtgattgacttagag----tggtctttggatgggtgacctactgggaagtttccc 43057010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 35010018 - 35009974
Alignment:
Q  11 cattccataagaactccacagttaagcgtgcttgacttggagtag 55  Q
    ||||||||||||||||||| |||||||||||||||||||||||||    
T  35010018 cattccataagaactccacggttaagcgtgcttgacttggagtag 35009974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 50002317 - 50002266
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| ||||||||||||||||||||||| || |||||||||||||||    
T  50002317 ttcggtagctcattccataagaactccacagttgagtgtgcttgacttggag 50002266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 2635038 - 2635091
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggagta 54  Q
    ||||||||| ||||| |||||||||||||||||||||||| ||| |||||||||    
T  2635038 ttcggtagctcattcaataagaactccacagttaagcgtgtttggcttggagta 2635091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 97
Target Start/End: Original strand, 2634591 - 2634672
Alignment:
Q  12 attccataagaactccacagttaagcgtgcttgacttggagtagctagtctttggatggatggccttctgagaagtttcccaaaaa 97  Q
    |||| ||||||||| ||| ||||| ||||||||||||||||    ||||||||||||||||| | ||||| ||||||| |||||||    
T  2634591 attcaataagaacttcactgttaaacgtgcttgacttggag----tagtctttggatggatgacattctgggaagttttccaaaaa 2634672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 4 - 93
Target Start/End: Original strand, 12883641 - 12883726
Alignment:
Q  4 ggtagcacattccataagaactccacagttaagcgtgcttgacttggagtagctagtctttggatggatggccttctgagaagtttccca 93  Q
    |||||| |||||||||| ||||||||||||||| ||| |||||||| ||    |||| |||||||||||| ||| ||| |||||||||||    
T  12883641 ggtagctcattccataaaaactccacagttaagtgtgtttgacttgaag----tagtttttggatggatgacctactgggaagtttccca 12883726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 4 - 92
Target Start/End: Original strand, 7548208 - 7548292
Alignment:
Q  4 ggtagcacattccataagaactccacagttaagcgtgcttgacttggagtagctagtctttggatggatggccttctgagaagtttccc 92  Q
    |||||| ||||  |||||||||||||| |||||||| ||||||||||||    |||||||||||||| || ||| | ||||||||||||    
T  7548208 ggtagcccatttgataagaactccacaattaagcgtacttgacttggag----tagtctttggatgggtgacctaccgagaagtttccc 7548292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 23180844 - 23180895
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    |||| |||| ||||||||||||| |||||| |||||||||||||||||||||    
T  23180844 ttcgctagcccattccataagaattccacaattaagcgtgcttgacttggag 23180895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 35759640 - 35759589
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| ||||||||||||||| || |||||| ||||||||||||||||    
T  35759640 ttcggtagctcattccataagaacttcatagttaaacgtgcttgacttggag 35759589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 46693767 - 46693716
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||| | |||| ||||| |||||||||||||||||||||||||||||||    
T  46693767 ttcggtatctcatttcataataactccacagttaagcgtgcttgacttggag 46693716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 5 - 52
Target Start/End: Complemental strand, 50003103 - 50003056
Alignment:
Q  5 gtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||| ||||||| ||||||| ||||||||||||||||||||||||||    
T  50003103 gtagctcattccaaaagaacttcacagttaagcgtgcttgacttggag 50003056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 35760943 - 35760895
Alignment:
Q  4 ggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    |||||| |||||||| ||||||||  |||||||||||||||||||||||    
T  35760943 ggtagctcattccatgagaactccgtagttaagcgtgcttgacttggag 35760895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 35
Target Start/End: Original strand, 2328432 - 2328463
Alignment:
Q  4 ggtagcacattccataagaactccacagttaa 35  Q
    ||||||||||||||||||||||||||||||||    
T  2328432 ggtagcacattccataagaactccacagttaa 2328463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 20061223 - 20061188
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaag 36  Q
    ||||||||| ||||||||||||||||||||||||||    
T  20061223 ttcggtagctcattccataagaactccacagttaag 20061188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 50002739 - 50002688
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| |||||  ||||||||||| ||||||||||| |||||||||||    
T  50002739 ttcggtagctcattctttaagaactccatagttaagcgtgtttgacttggag 50002688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 90
Target Start/End: Complemental strand, 30872972 - 30872897
Alignment:
Q  11 cattccataagaactccacagttaagcgtgcttgacttggagtagctagtctttggatggatggccttctgagaagtttc 90  Q
    ||||| |||||||||||||| |||||| ||||||||||| ||    |||||||||||||| || ||| |||| |||||||    
T  30872972 cattctataagaactccacaattaagcatgcttgacttgcag----tagtctttggatgggtgacctactgaaaagtttc 30872897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 31822695 - 31822645
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttgga 51  Q
    ||||||||| || |||| |||||||||||||||||||||  ||||||||||    
T  31822695 ttcggtagctcaatccaaaagaactccacagttaagcgtttttgacttgga 31822645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 51
Target Start/End: Original strand, 10820718 - 10820758
Alignment:
Q  11 cattccataagaactccacagttaagcgtgcttgacttgga 51  Q
    |||| |||||||| | |||||||||||||||||||||||||    
T  10820718 catttcataagaaattcacagttaagcgtgcttgacttgga 10820758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 39)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 5 - 73
Target Start/End: Complemental strand, 23942811 - 23942747
Alignment:
Q  5 gtagcacattccataagaactccacagttaagcgtgcttgacttggagtagctagtctttggatggatg 73  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||    
T  23942811 gtagcacattccataagaactccacagttaagcgtgcttgacttggag----tagtctttggatggatg 23942747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 23943265 - 23943214
Alignment:
Q  4 ggtagcacattccataagaactccacagttaagcgtgcttgacttggagtag 55  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23943265 ggtagcacattccataagaactccacagttaagcgtgcttgacttggagtag 23943214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 1645772 - 1645721
Alignment:
Q  4 ggtagcacattccataagaactccacagttaagcgtgcttgacttggagtag 55  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  1645772 ggtagcccattccataagaactccacagttaagcgtgcttgacttggagtag 1645721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 12692025 - 12691974
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  12692025 ttcggtagctcattccataagaactccacagttaagcgtgcttgacttggag 12691974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 35871741 - 35871792
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  35871741 ttcggtagctcattccataagaactccacagttaagcgtgcttgacttggag 35871792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 50814851 - 50814800
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  50814851 ttcggtagctcattccataagaactccacagttaagcgtgcttgacttggag 50814800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 50398564 - 50398511
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggagta 54  Q
    ||||||||| |||||||||||||||||| |||||||||||||||||||||||||    
T  50398564 ttcggtagctcattccataagaactccatagttaagcgtgcttgacttggagta 50398511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 50399019 - 50398966
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggagta 54  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||||||||||    
T  50399019 ttcggtagctcattccataagaactccacagttaagcgtgtttgacttggagta 50398966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 51331307 - 51331254
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggagta 54  Q
    ||||||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  51331307 ttcggtagctcatttcataagaactccacagttaagcgtgcttgacttggagta 51331254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 13613924 - 13613840
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggagtagctagtctttggatggatggccttctgagaagttt 89  Q
    ||||||||  ||||| |||||||||||||||||||||||| ||||||||||    ||||||||||||||| || | |||||||||||||    
T  13613924 ttcggtagttcattctataagaactccacagttaagcgtgtttgacttgga----ctagtctttggatgggtgacgttctgagaagttt 13613840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 15306117 - 15306070
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgactt 48  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  15306117 ttcggtagctcattccataagaactccacagttaagcgtgcttgactt 15306070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 29628691 - 29628640
Alignment:
Q  4 ggtagcacattccataagaactccacagttaagcgtgcttgacttggagtag 55  Q
    |||||| |||||||||||||||||||||||||||||| ||||||||||||||    
T  29628691 ggtagcccattccataagaactccacagttaagcgtgtttgacttggagtag 29628640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 44471351 - 44471300
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  44471351 ttcggtagctcattccataagaactccacagttaagcgtgcttgatttggag 44471300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 49998750 - 49998801
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||||||||    
T  49998750 ttcggtagctcattccataagaactccacagttaagcgtgtttgacttggag 49998801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 44470891 - 44470850
Alignment:
Q  11 cattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  44470891 cattccataagaactccacagttaagcgtgcttgacttggag 44470850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 53996131 - 53996087
Alignment:
Q  11 cattccataagaactccacagttaagcgtgcttgacttggagtag 55  Q
    |||||||||||||||||||||||||| ||||||||||||||||||    
T  53996131 cattccataagaactccacagttaagtgtgcttgacttggagtag 53996087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 7678648 - 7678597
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    |||||||||  ||||||||||||||||||||||||| |||||||||||||||    
T  7678648 ttcggtagcttattccataagaactccacagttaagtgtgcttgacttggag 7678597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 52
Target Start/End: Complemental strand, 24628991 - 24628952
Alignment:
Q  13 ttccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  24628991 ttccataagaactccacagttaagcgtgcttgacttggag 24628952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 14 - 55
Target Start/End: Original strand, 3169333 - 3169374
Alignment:
Q  14 tccataagaactccacagttaagcgtgcttgacttggagtag 55  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  3169333 tccataagaactccacacttaagcgtgcttgacttggagtag 3169374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 11828509 - 11828460
Alignment:
Q  3 cggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||| | ||||||||||||||||||||||||||||||| ||||||||    
T  11828509 cggtagctccttccataagaactccacagttaagcgtgctttacttggag 11828460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 14571700 - 14571663
Alignment:
Q  15 ccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||||||||||||||||||||||||||||||||    
T  14571700 ccataagaactccacagttaagcgtgcttgacttggag 14571663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 14351920 - 14351977
Alignment:
Q  12 attccataagaactccacagttaagcgtgcttgacttggagtagctagtctttggatggatg 73  Q
    ||||||||||||||||||||||||||||| ||||||| |||    |||||||||||||||||    
T  14351920 attccataagaactccacagttaagcgtgtttgacttcgag----tagtctttggatggatg 14351977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 21067855 - 21067899
Alignment:
Q  11 cattccataagaactccacagttaagcgtgcttgacttggagtag 55  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||    
T  21067855 cattccataagaacttcacagttaagcgtgcttgacttgaagtag 21067899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 23350309 - 23350258
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| | ||||||||||||| || |||||||||||||||||||||||    
T  23350309 ttcggtagctccttccataagaacttcatagttaagcgtgcttgacttggag 23350258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 52
Target Start/End: Complemental strand, 24629447 - 24629408
Alignment:
Q  13 ttccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  24629447 ttccataagaattccacagttaagcgtgcttgacttggag 24629408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 27029391 - 27029434
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttg 44  Q
    ||||||||| |||||||||||||||||||||||||| |||||||    
T  27029391 ttcggtagcccattccataagaactccacagttaagtgtgcttg 27029434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 8467815 - 8467783
Alignment:
Q  20 agaactccacagttaagcgtgcttgacttggag 52  Q
    |||||||||||||||||||||||||||||||||    
T  8467815 agaactccacagttaagcgtgcttgacttggag 8467783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 52
Target Start/End: Original strand, 17029455 - 17029495
Alignment:
Q  12 attccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||||||||||||||||||| |||||| ||||||||    
T  17029455 attccataagaactccacagttaagagtgcttaacttggag 17029495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 21067398 - 21067450
Alignment:
Q  3 cggtagcacattccataagaactccacagttaagcgtgcttgacttggagtag 55  Q
    ||||||| ||||| | ||| |||||||| ||||||||||||||||||||||||    
T  21067398 cggtagctcattctaaaagtactccacaattaagcgtgcttgacttggagtag 21067450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 46
Target Start/End: Complemental strand, 14571733 - 14571702
Alignment:
Q  15 ccataagaactccacagttaagcgtgcttgac 46  Q
    ||||||||||||||||||||||||||||||||    
T  14571733 ccataagaactccacagttaagcgtgcttgac 14571702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 27578296 - 27578261
Alignment:
Q  17 ataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| ||||||||||||||||||||||||||    
T  27578296 ataagaacttcacagttaagcgtgcttgacttggag 27578261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 52
Target Start/End: Complemental strand, 27578922 - 27578884
Alignment:
Q  14 tccataagaactccacagttaagcgtgcttgacttggag 52  Q
    |||||||||||| ||||||||||||||||| ||||||||    
T  27578922 tccataagaactacacagttaagcgtgcttaacttggag 27578884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 31817878 - 31817824
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggagtag 55  Q
    ||||||||  |||| |||||||||| || |||||||||||||||||||| |||||    
T  31817878 ttcggtagtccatttcataagaacttcatagttaagcgtgcttgacttgtagtag 31817824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 20306180 - 20306139
Alignment:
Q  11 cattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    |||| |||||||||| ||| ||||||||||||||||||||||    
T  20306180 catttcataagaactacacggttaagcgtgcttgacttggag 20306139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 21220347 - 21220306
Alignment:
Q  11 cattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||| ||||||||| |||||||||||||| |||||||||||    
T  21220347 cattctataagaactacacagttaagcgtgtttgacttggag 21220306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 27026619 - 27026664
Alignment:
Q  4 ggtagcacattccataagaactccacagttaagcgtgcttgacttg 49  Q
    |||||| ||||||||||||||| |  ||||||||||||||||||||    
T  27026619 ggtagcccattccataagaactacgtagttaagcgtgcttgacttg 27026664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 48
Target Start/End: Complemental strand, 27578469 - 27578436
Alignment:
Q  15 ccataagaactccacagttaagcgtgcttgactt 48  Q
    |||||||||||||| |||||||||||||||||||    
T  27578469 ccataagaactccatagttaagcgtgcttgactt 27578436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 4127463 - 4127431
Alignment:
Q  1 ttcggtagcacattccataagaactccacagtt 33  Q
    ||||||||| |||||||||||||||||||||||    
T  4127463 ttcggtagctcattccataagaactccacagtt 4127431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 52
Target Start/End: Original strand, 17028999 - 17029039
Alignment:
Q  12 attccataagaactccacagttaagcgtgcttgacttggag 52  Q
    |||||||||||||| || ||||||| |||||||||||||||    
T  17028999 attccataagaacttcatagttaagagtgcttgacttggag 17029039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 16379054 - 16379105
Alignment:
Q  4 ggtagcacattccataagaactccacagttaagcgtgcttgacttggagtag 55  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16379054 ggtagcacattccataagaactccacagttaagcgtgcttgacttggagtag 16379105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 8256640 - 8256691
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  8256640 ttcggtagctcattccataagaactccacagttaagcgtgcttgacttggag 8256691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 11388301 - 11388352
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  11388301 ttcggtagctcattccataagaactccacagttaagcgtgcttgacttggag 11388352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 24818440 - 24818491
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  24818440 ttcggtagctcattccataagaactccacagttaagcgtgcttgacttggag 24818491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 41754403 - 41754454
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  41754403 ttcggtagctcattccataagaactccacagttaagcgtgcttgacttggag 41754454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 16379510 - 16379560
Alignment:
Q  4 ggtagcacattccataagaactccacagttaagcgtgcttgacttggagta 54  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  16379510 ggtagcacattccataagaactccacagttaagcgtgtttgacttggagta 16379560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 33174617 - 33174671
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggagtag 55  Q
    ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  33174617 ttcggtagcccattccataagaactccgcagttaagcgtgcttgacttggagtag 33174671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 25434085 - 25434036
Alignment:
Q  4 ggtagcacattccataagaactccacagttaagcgtgcttgacttggagt 53  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  25434085 ggtagcccattccataagaactccacagttaagcgtgcttgacttggagt 25434036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 29804796 - 29804844
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttg 49  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  29804796 ttcggtagctcattccataagaactccacagttaagcgtgcttgacttg 29804844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 30966804 - 30966855
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  30966804 ttcggtagctcattccataagaactccacagttaagcgtgcttaacttggag 30966855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 1912641 - 1912691
Alignment:
Q  4 ggtagcacattccataagaactccacagttaagcgtgcttgacttggagta 54  Q
    |||||| |||||||||||||||||||||||||||||| |||||||||||||    
T  1912641 ggtagcccattccataagaactccacagttaagcgtgattgacttggagta 1912691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 5399849 - 5399798
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| ||||||||||||||| || |||||||||||||||||||||||    
T  5399849 ttcggtagctcattccataagaacttcatagttaagcgtgcttgacttggag 5399798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 25338029 - 25337978
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    |||| |||| |||| |||||||||||||||||||||||||||||||||||||    
T  25338029 ttcgatagctcatttcataagaactccacagttaagcgtgcttgacttggag 25337978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 32377748 - 32377697
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| ||||||| ||||||||||||||||||| ||||||||||||||    
T  32377748 ttcggtagctcattccaaaagaactccacagttaagcatgcttgacttggag 32377697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 33771115 - 33771166
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| |||| |||||||||||||||||||||| ||||||||||||||    
T  33771115 ttcggtagctcatttcataagaactccacagttaagcatgcttgacttggag 33771166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 38898941 - 38898890
Alignment:
Q  4 ggtagcacattccataagaactccacagttaagcgtgcttgacttggagtag 55  Q
    |||| |||||| ||||||||||||||||||||||||||||||||| ||||||    
T  38898941 ggtaacacatttcataagaactccacagttaagcgtgcttgacttagagtag 38898890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 30966348 - 30966398
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttgga 51  Q
    ||||||| | |||||||||||||||||| ||||||||||||||||||||||    
T  30966348 ttcggtatctcattccataagaactccatagttaagcgtgcttgacttgga 30966398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 52
Target Start/End: Original strand, 11394658 - 11394698
Alignment:
Q  12 attccataagaactccacagttaagcgtgcttgacttggag 52  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  11394658 attccataagaacttcacagttaagcgtgcttgacttggag 11394698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 14 - 90
Target Start/End: Original strand, 15620025 - 15620097
Alignment:
Q  14 tccataagaactccacagttaagcgtgcttgacttggagtagctagtctttggatggatggccttctgagaagtttc 90  Q
    ||||||||||||||||| ||||||||||||||||| |||    |||||||||||||| || ||| ||| ||||||||    
T  15620025 tccataagaactccacaattaagcgtgcttgactttgag----tagtctttggatgggtgacctactgggaagtttc 15620097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 14 - 90
Target Start/End: Original strand, 15639861 - 15639933
Alignment:
Q  14 tccataagaactccacagttaagcgtgcttgacttggagtagctagtctttggatggatggccttctgagaagtttc 90  Q
    |||| |||||||||||| |||||||||||||||||||||    |||||||||||||| || ||| ||| ||||||||    
T  15639861 tccacaagaactccacaattaagcgtgcttgacttggag----tagtctttggatgggtgacctactgggaagtttc 15639933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 89
Target Start/End: Complemental strand, 27882946 - 27882874
Alignment:
Q  13 ttccataagaactccacagttaagcgtgcttgacttggagtagctagtctttggatggatggccttctgagaagttt 89  Q
    |||||||||||||||||| ||||||||| |||||||||||    |||||||||||| | || ||| |||||||||||    
T  27882946 ttccataagaactccacaattaagcgtgtttgacttggag----tagtctttggataggtgacctactgagaagttt 27882874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 33175075 - 33175124
Alignment:
Q  4 ggtagcacattccataagaactccacagttaagcgtgcttgacttggagta 54  Q
    |||||| |||| ||||||||||||||||||||||||| |||||||||||||    
T  33175075 ggtagctcatttcataagaactccacagttaagcgtg-ttgacttggagta 33175124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 83134 - 83181
Alignment:
Q  4 ggtagcacattccataagaactccacagttaagcgtgcttgacttgga 51  Q
    |||||| |||||||||||||||| ||||||||||||| |||| |||||    
T  83134 ggtagctcattccataagaactctacagttaagcgtgtttgatttgga 83181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 29259652 - 29259605
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgactt 48  Q
    ||||||||| |||| |||||||||| || |||||||||||||||||||    
T  29259652 ttcggtagctcatttcataagaacttcatagttaagcgtgcttgactt 29259605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 50
Target Start/End: Complemental strand, 30963738 - 30963703
Alignment:
Q  15 ccataagaactccacagttaagcgtgcttgacttgg 50  Q
    |||||| |||||||||||||||||||||||||||||    
T  30963738 ccataataactccacagttaagcgtgcttgacttgg 30963703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 48
Target Start/End: Complemental strand, 30961901 - 30961868
Alignment:
Q  15 ccataagaactccacagttaagcgtgcttgactt 48  Q
    ||||||||||||||||||||| ||||||||||||    
T  30961901 ccataagaactccacagttaaacgtgcttgactt 30961868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 32377921 - 32377888
Alignment:
Q  19 aagaactccacagttaagcgtgcttgacttggag 52  Q
    |||||||||||||||||||||| |||||||||||    
T  32377921 aagaactccacagttaagcgtgtttgacttggag 32377888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 30963280 - 30963244
Alignment:
Q  16 cataagaactccacagttaagcgtgcttgacttggag 52  Q
    |||||||| || |||||||||||||||||||||||||    
T  30963280 cataagaattcaacagttaagcgtgcttgacttggag 30963244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0499 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: scaffold0499
Description:

Target: scaffold0499; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 2083 - 2032
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  2083 ttcggtagctcattccataagaactccacagttaagcgtgcttgacttggag 2032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0499; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 100 - 142
Target Start/End: Complemental strand, 1944 - 1902
Alignment:
Q  100 gtggagtcagtcgacaatcctaaaagtcgtctgagatgttaca 142  Q
    |||| ||||||||||||||||||||||||| || |||||||||    
T  1944 gtggggtcagtcgacaatcctaaaagtcgtttgggatgttaca 1902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 14734 - 14683
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  14734 ttcggtagctcattccataagaactccacagttaagcgtgcttgacttggag 14683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0243 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0243
Description:

Target: scaffold0243; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 1334 - 1385
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  1334 ttcggtagctcattccataagaactccacagttaagcgtgcttgacttggag 1385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 2856 - 2907
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  2856 ttcggtagctcattccataagaactccacagttaagcgtgcttgacttggag 2907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 105834 - 105885
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  105834 ttcggtagctcattccataagaactccacagttaagcgtgcttgacttggag 105885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 163166 - 163115
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  163166 ttcggtagctcattccataagaactccacagttaagcgtgcttgacttggag 163115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 162710 - 162659
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  162710 ttcggtagctcattccataagaactccgcagttaagcgtgcttgacttggag 162659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 163185 - 163236
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| |||||  |||||| ||||||||||||||||||||||||||||    
T  163185 ttcggtagctcattctttaagaattccacagttaagcgtgcttgacttggag 163236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 6 - 89
Target Start/End: Complemental strand, 69842 - 69763
Alignment:
Q  6 tagcacattccataagaactccacagttaagcgtgcttgacttggagtagctagtctttggatggatggccttctgagaagttt 89  Q
    |||| |||||||||||||||||||||||| ||| |||||||| ||||    |||||||||||||| || ||||| | |||||||    
T  69842 tagctcattccataagaactccacagttatgcgggcttgactaggag----tagtctttggatgggtgaccttcagggaagttt 69763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 107495 - 107444
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  107495 ttcggtagctcattccataagaactccacagttaagcgtgcttgacttggag 107444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 10414 - 10465
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  10414 ttcggtagctcattccataagaactccacagttaagcgtgcttgacttggag 10465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 33)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 12827286 - 12827235
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  12827286 ttcggtagctcattccataagaactccacagttaagcgtgcttgacttggag 12827235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 22026493 - 22026544
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  22026493 ttcggtagctcattccataagaactccacagttaagcgtgcttgacttggag 22026544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 25144886 - 25144937
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  25144886 ttcggtagctcattccataagaactccacagttaagcgtgcttgacttggag 25144937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 4 - 91
Target Start/End: Original strand, 28453455 - 28453538
Alignment:
Q  4 ggtagcacattccataagaactccacagttaagcgtgcttgacttggagtagctagtctttggatggatggccttctgagaagtttcc 91  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||||    ||||||||||||||||| ||| ||  |||||||||    
T  28453455 ggtagcccattccataagaactctacagttaagcgtgcttgacttggag----tagtctttggatggatgacctactcggaagtttcc 28453538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 6 - 55
Target Start/End: Original strand, 32292516 - 32292565
Alignment:
Q  6 tagcacattccataagaactccacagttaagcgtgcttgacttggagtag 55  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  32292516 tagcccattccataagaactccacagttaagcgtgcttgacttggagtag 32292565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 10844647 - 10844599
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttg 49  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  10844647 ttcggtagctcattccataagaactccacagttaagcgtgcttgacttg 10844599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 2044175 - 2044226
Alignment:
Q  4 ggtagcacattccataagaactccacagttaagcgtgcttgacttggagtag 55  Q
    |||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  2044175 ggtagcccattccataataactccacagttaagcgtgcttgacttggagtag 2044226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 6464939 - 6464888
Alignment:
Q  4 ggtagcacattccataagaactccacagttaagcgtgcttgacttggagtag 55  Q
    |||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  6464939 ggtagctcattccataacaactccacagttaagcgtgcttgacttggagtag 6464888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 8080371 - 8080320
Alignment:
Q  4 ggtagcacattccataagaactccacagttaagcgtgcttgacttggagtag 55  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  8080371 ggtagcccattccataagaacttcacagttaagcgtgcttgacttggagtag 8080320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 17103195 - 17103246
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  17103195 ttcggtagctcattccataagaactccacggttaagcgtgcttgacttggag 17103246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 22548581 - 22548530
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  22548581 ttcggtagctcattccataataactccacagttaagcgtgcttgacttggag 22548530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 22549027 - 22548976
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  22549027 ttcggtagctcattccataaaaactccacagttaagcgtgcttgacttggag 22548976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 25148081 - 25148128
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgactt 48  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  25148081 ttcggtagctcattccataagaactccacagttaagcgtgcttgactt 25148128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 27022370 - 27022319
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  27022370 ttcggcagctcattccataagaactccacagttaagcgtgcttgacttggag 27022319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 27926013 - 27926064
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  27926013 ttcggtagctcatttcataagaactccacagttaagcgtgcttgacttggag 27926064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 10844997 - 10845043
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgact 47  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||    
T  10844997 ttcggtagctcattccataagaactccacagttaagcgtgcttgact 10845043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 12100805 - 12100856
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| |||| |||||||||| ||||||||||||||||||||||||||    
T  12100805 ttcggtagctcatttcataagaacttcacagttaagcgtgcttgacttggag 12100856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 25147650 - 25147701
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| |||||||||||||||||| |||||| ||||||||||||||||    
T  25147650 ttcggtagctcattccataagaactccatagttaatcgtgcttgacttggag 25147701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 31283683 - 31283636
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgactt 48  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||||    
T  31283683 ttcggtagcccattccataagaactccacagttaagtgtgcttgactt 31283636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 33852287 - 33852236
Alignment:
Q  4 ggtagcacattccataagaactccacagttaagcgtgcttgacttggagtag 55  Q
    |||||| ||||||||||||||| |||| ||||||||||||||||||||||||    
T  33852287 ggtagcccattccataagaacttcacaattaagcgtgcttgacttggagtag 33852236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 34308967 - 34308916
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    |||||||||  ||||||||||||||||||||||||||||||||| |||||||    
T  34308967 ttcggtagcctattccataagaactccacagttaagcgtgcttggcttggag 34308916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 41913087 - 41913138
Alignment:
Q  4 ggtagcacattccataagaactccacagttaagcgtgcttgacttggagtag 55  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||| |||||    
T  41913087 ggtagcccattccataagaactccgcagttaagcgtgcttgacttgaagtag 41913138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 5 - 54
Target Start/End: Complemental strand, 21316137 - 21316088
Alignment:
Q  5 gtagcacattccataagaactccacagttaagcgtgcttgacttggagta 54  Q
    ||||| |||| ||||||||||||||||||||| |||||||||||||||||    
T  21316137 gtagctcatttcataagaactccacagttaagtgtgcttgacttggagta 21316088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 15819047 - 15818956
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggagtagctagtctttggatggatggccttctgagaagtttcccaaaaa 97  Q
    ||||||||||||||||||||||||| |||||||||   ||||||||||||||    ||| ||||||||||  | ||||||| |||||||||| ||||    
T  15819047 ttcggtagcacattccataagaact-cacagttaaatttgcttgacttggag----taggctttggatgggcgaccttctgggaagtttcccgaaaa 15818956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 34308511 - 34308460
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    |||||||||  ||||||||||||||||||| ||||||||||||| |||||||    
T  34308511 ttcggtagcctattccataagaactccacacttaagcgtgcttggcttggag 34308460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 41659137 - 41659086
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    |||| |||| |||| ||||||||||||||||||||||||| |||||||||||    
T  41659137 ttcgatagctcattacataagaactccacagttaagcgtgtttgacttggag 41659086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 100 - 142
Target Start/End: Original strand, 17103335 - 17103377
Alignment:
Q  100 gtggagtcagtcgacaatcctaaaagtcgtctgagatgttaca 142  Q
    |||| |||||||||||||||||||||||||||| |||||||||    
T  17103335 gtggggtcagtcgacaatcctaaaagtcgtctgggatgttaca 17103377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 105 - 142
Target Start/End: Complemental strand, 10844503 - 10844466
Alignment:
Q  105 gtcagtcgacaatcctaaaagtcgtctgagatgttaca 142  Q
    |||||||||||||||||||||||||||| |||||||||    
T  10844503 gtcagtcgacaatcctaaaagtcgtctgggatgttaca 10844466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 3745218 - 3745262
Alignment:
Q  4 ggtagcacattccataagaactccacagttaagcgtgcttgactt 48  Q
    |||||| |||||||||| ||||||||||| |||||||||||||||    
T  3745218 ggtagcccattccataataactccacagtcaagcgtgcttgactt 3745262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 10729747 - 10729791
Alignment:
Q  11 cattccataagaactccacagttaagcgtgcttgacttggagtag 55  Q
    |||||||||||||||||||| ||||||||| | ||||||||||||    
T  10729747 cattccataagaactccacaattaagcgtgatagacttggagtag 10729791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 25307881 - 25307932
Alignment:
Q  4 ggtagcacattccataagaactccacagttaagcgtgcttgacttggagtag 55  Q
    |||||| |||||  |||||||||||||||||||| |||||||||||| ||||    
T  25307881 ggtagcccattctgtaagaactccacagttaagcttgcttgacttggtgtag 25307932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 6 - 102
Target Start/End: Complemental strand, 27819273 - 27819181
Alignment:
Q  6 tagcacattccataagaactccacagttaagcgtgcttgacttggagtagctagtctttggatggatggccttctgagaagtttcccaaaaaacgtg 102  Q
    |||| |||||||||| ||||||||||||||| ||| ||||||| |||    |||| ||||||||| || |||||||| |||||| ||| ||| ||||    
T  27819273 tagctcattccataaaaactccacagttaagtgtgtttgactttgag----tagtatttggatgggtgaccttctgataagttttccagaaagcgtg 27819181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 15567578 - 15567534
Alignment:
Q  11 cattccataagaactccacagttaagcgtgcttgacttggagtag 55  Q
    |||| |||||||||||| ||||||| |||| ||||||||||||||    
T  15567578 catttcataagaactccgcagttaatcgtgtttgacttggagtag 15567534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 36)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 679933 - 679984
Alignment:
Q  4 ggtagcacattccataagaactccacagttaagcgtgcttgacttggagtag 55  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  679933 ggtagcccattccataagaactccacagttaagcgtgcttgacttggagtag 679984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 2465847 - 2465898
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  2465847 ttcggtagctcattccataagaactccacagttaagcgtgcttgacttggag 2465898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 2466038 - 2466089
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  2466038 ttcggtagctcattccataagaactccacagttaagcgtgcttgacttggag 2466089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 2941789 - 2941738
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  2941789 ttcggtagctcattccataagaactccacagttaagcgtgcttgacttggag 2941738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 13125168 - 13125117
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  13125168 ttcggtagctcattccataagaactccacagttaagcgtgcttgacttggag 13125117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 28495968 - 28496019
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  28495968 ttcggtagctcattccataagaactccacagttaagcgtgcttgacttggag 28496019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 34405623 - 34405572
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  34405623 ttcggtagctcattccataagaactccacagttaagcgtgcttgacttggag 34405572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 42515209 - 42515260
Alignment:
Q  4 ggtagcacattccataagaactccacagttaagcgtgcttgacttggagtag 55  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  42515209 ggtagctcattccataagaactccacagttaagcgtgcttgacttggagtag 42515260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 42515658 - 42515709
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  42515658 ttcggtagctcattccataagaactccacagttaagcgtgcttgacttggag 42515709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 43776322 - 43776271
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  43776322 ttcggtagctcattccataagaactccacagttaagcgtgcttgacttggag 43776271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 6719106 - 6719053
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggagta 54  Q
    ||||||||| |||||||||||||||||| |||||||||||||||||||||||||    
T  6719106 ttcggtagctcattccataagaactccagagttaagcgtgcttgacttggagta 6719053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 28495637 - 28495589
Alignment:
Q  4 ggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  28495637 ggtagctcattccataagaactccacagttaagcgtgcttgacttggag 28495589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 7646510 - 7646459
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  7646510 ttcggtagctcattccataagaacttcacagttaagcgtgcttgacttggag 7646459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 7646529 - 7646580
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  7646529 ttcggtaactcattccataagaactccacagttaagcgtgcttgacttggag 7646580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 9125073 - 9125124
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  9125073 ttcggtagctcattccataagaactccacagttaagcgtgcttgactcggag 9125124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 9623321 - 9623405
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggagtagctagtctttggatggatggccttctgagaagttt 89  Q
    ||||||||  ||||| |||||||||||||||||||||||| ||||||||||    ||||||||||||||| || | |||||||||||||    
T  9623321 ttcggtagttcattctataagaactccacagttaagcgtgtttgacttgga----ctagtctttggatgggtgacgttctgagaagttt 9623405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 13122537 - 13122486
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  13122537 ttcggtagctcattccataagaactccacagttaagcgtgcttgatttggag 13122486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 25182475 - 25182567
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggagtagctagtctttggatggatggccttctgagaagtttcccaaaaa 97  Q
    ||||||| | ||||||||||||||| |||||||||| ||| |||||||||||    ||||||||||||||| | ||||||| |||||||| ||||||    
T  25182475 ttcggtaactcattccataagaacttcacagttaagtgtgtttgacttggag----tagtctttggatggaggaccttctgggaagtttctcaaaaa 25182567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 35474150 - 35474099
Alignment:
Q  4 ggtagcacattccataagaactccacagttaagcgtgcttgacttggagtag 55  Q
    |||||| |||||||||||||||||||||||||||||| ||||||||||||||    
T  35474150 ggtagctcattccataagaactccacagttaagcgtgtttgacttggagtag 35474099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 36422366 - 36422417
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  36422366 ttcggtagctcatttcataagaactccacagttaagcgtgcttgacttggag 36422417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 46425866 - 46425909
Alignment:
Q  12 attccataagaactccacagttaagcgtgcttgacttggagtag 55  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  46425866 attccataagaactccacagttaagcgtgcttgacttggagtag 46425909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 2189258 - 2189309
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    |||| |||| |||| |||||||||||||||||||||||||||||||||||||    
T  2189258 ttcgatagctcatttcataagaactccacagttaagcgtgcttgacttggag 2189309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 29039042 - 29038984
Alignment:
Q  11 cattccataagaactccacagttaagcgtgcttgacttggagtagctagtctttggatggatg 73  Q
    |||||||||||||||| ||| |||||||||||||||||||||    |||||||||||||||||    
T  29039042 cattccataagaactctacatttaagcgtgcttgacttggag----tagtctttggatggatg 29038984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 35527143 - 35527099
Alignment:
Q  11 cattccataagaactccacagttaagcgtgcttgacttggagtag 55  Q
    ||||||||| ||||||||||||||||| |||||||||||||||||    
T  35527143 cattccataggaactccacagttaagcatgcttgacttggagtag 35527099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 2193370 - 2193421
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| |||| |||| ||||||||||||||||||||||||| ||||||    
T  2193370 ttcggtagctcatttcataggaactccacagttaagcgtgcttgatttggag 2193421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 2611681 - 2611630
Alignment:
Q  4 ggtagcacattccataagaactccacagttaagcgtgcttgacttggagtag 55  Q
    |||||| ||||| |||||||||||| |||||||||||||| |||||||||||    
T  2611681 ggtagcccattctataagaactccatagttaagcgtgctttacttggagtag 2611630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 22529249 - 22529182
Alignment:
Q  19 aagaactccacagttaagcgtgcttgacttggagtagctagtctttggatggatggccttctgagaagtttc 90  Q
    ||||||| |||||||||||||| |||||||||||    |||||||||||||| || ||| ||||||||||||    
T  22529249 aagaacttcacagttaagcgtgtttgacttggag----tagtctttggatgggtgacctactgagaagtttc 22529182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 26421792 - 26421738
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggagtag 55  Q
    ||||||||| ||||||||||||||| |||||||||||||| ||| ||| ||||||    
T  26421792 ttcggtagcccattccataagaactacacagttaagcgtgtttggcttcgagtag 26421738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 15 - 48
Target Start/End: Complemental strand, 5406606 - 5406573
Alignment:
Q  15 ccataagaactccacagttaagcgtgcttgactt 48  Q
    ||||||||||||||||||||||||||||||||||    
T  5406606 ccataagaactccacagttaagcgtgcttgactt 5406573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 48
Target Start/End: Complemental strand, 6747619 - 6747583
Alignment:
Q  12 attccataagaactccacagttaagcgtgcttgactt 48  Q
    ||||||||| |||||||||||||||||||||||||||    
T  6747619 attccataaaaactccacagttaagcgtgcttgactt 6747583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 3305377 - 3305326
Alignment:
Q  4 ggtagcacattccataagaactccacagttaagcgtgcttgacttggagtag 55  Q
    |||||| |||| ||||| |||| ||||||||||||||||||| |||||||||    
T  3305377 ggtagctcattacataaaaacttcacagttaagcgtgcttgatttggagtag 3305326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 18833400 - 18833447
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgactt 48  Q
    |||||||||  ||| ||||||||||||||||||||||||| |||||||    
T  18833400 ttcggtagctaattacataagaactccacagttaagcgtgtttgactt 18833447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 108 - 142
Target Start/End: Original strand, 7646676 - 7646710
Alignment:
Q  108 agtcgacaatcctaaaagtcgtctgagatgttaca 142  Q
    ||||||||||||||||||||||||| |||||||||    
T  7646676 agtcgacaatcctaaaagtcgtctgggatgttaca 7646710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 26421337 - 26421287
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttgga 51  Q
    ||||||||  ||||||||||||||||||||||||| |||| |||| |||||    
T  26421337 ttcggtagtccattccataagaactccacagttaaacgtgtttgaattgga 26421287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 31406616 - 31406574
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgctt 43  Q
    ||||||||| | || ||||||||||||||||||||||||||||    
T  31406616 ttcggtagcccgtttcataagaactccacagttaagcgtgctt 31406574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 20966165 - 20966213
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttg 49  Q
    ||||||||| ||||||||||||||| ||||||||| | ||| |||||||    
T  20966165 ttcggtagctcattccataagaacttcacagttaaacatgcatgacttg 20966213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 31)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 9352176 - 9352227
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  9352176 ttcggtagctcattccataagaactccacagttaagcgtgcttgacttggag 9352227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 11062402 - 11062453
Alignment:
Q  4 ggtagcacattccataagaactccacagttaagcgtgcttgacttggagtag 55  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  11062402 ggtagcccattccataagaactccacagttaagcgtgcttgacttggagtag 11062453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 16520082 - 16520133
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  16520082 ttcggtagctcattccataagaactccacagttaagcgtgcttgacttggag 16520133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 28780224 - 28780275
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  28780224 ttcggtagctcattccataagaactccacagttaagcgtgcttgacttggag 28780275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 2720592 - 2720541
Alignment:
Q  4 ggtagcacattccataagaactccacagttaagcgtgcttgacttggagtag 55  Q
    |||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  2720592 ggtagctcattccataagaactccacagttaagtgtgcttgacttggagtag 2720541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 13492446 - 13492497
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  13492446 ttcggtagctaattccataagaactccacagttaagcgtgcttgacttggag 13492497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 13492903 - 13492950
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgactt 48  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  13492903 ttcggtagctcattccataagaactccacagttaagcgtgcttgactt 13492950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 17027563 - 17027512
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  17027563 ttcggtagctcatttcataagaactccacagttaagcgtgcttgacttggag 17027512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 17851035 - 17851086
Alignment:
Q  4 ggtagcacattccataagaactccacagttaagcgtgcttgacttggagtag 55  Q
    |||||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  17851035 ggtagcccattctataagaactccacagttaagcgtgcttgacttggagtag 17851086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 20126211 - 20126160
Alignment:
Q  4 ggtagcacattccataagaactccacagttaagcgtgcttgacttggagtag 55  Q
    |||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  20126211 ggtagcacattccataagaattccacaattaagcgtgcttgacttggagtag 20126160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 20850435 - 20850486
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  20850435 ttcggtagctcattccataagaactctacagttaagcgtgcttgacttggag 20850486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 6330944 - 6330891
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggagta 54  Q
    ||||||||| |||| ||||||||||||||||||||||||||||||||| |||||    
T  6330944 ttcggtagctcatttcataagaactccacagttaagcgtgcttgactttgagta 6330891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 2890867 - 2890823
Alignment:
Q  5 gtagcacattccataagaactccacagttaagcgtgcttgacttg 49  Q
    ||||| |||||||||||||||||||||||||||||||||||||||    
T  2890867 gtagcccattccataagaactccacagttaagcgtgcttgacttg 2890823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 7911992 - 7912043
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| |||||||||||||||||||||||| || ||||||||||||||    
T  7911992 ttcggtagctcattccataagaactccacagttatgcttgcttgacttggag 7912043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 7912424 - 7912475
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| |||||||||||||||||| |||||| ||||||||||||||||    
T  7912424 ttcggtagctcattccataagaactccatagttaaacgtgcttgacttggag 7912475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 13191545 - 13191494
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| | ||||||||||||| ||||||||||||||||||||||||||    
T  13191545 ttcggtagctcgttccataagaacttcacagttaagcgtgcttgacttggag 13191494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 17851491 - 17851542
Alignment:
Q  4 ggtagcacattccataagaactccacagttaagcgtgcttgacttggagtag 55  Q
    |||||| ||||| |||||||||||||| ||||||||||||||||||||||||    
T  17851491 ggtagcccattctataagaactccacaattaagcgtgcttgacttggagtag 17851542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 11 - 89
Target Start/End: Complemental strand, 33775024 - 33774950
Alignment:
Q  11 cattccataagaactccacagttaagcgtgcttgacttggagtagctagtctttggatggatggccttctgagaagttt 89  Q
    |||||||||||||||||||||||||| ||| |||||||| ||    |||||||||||||| || ||| |||||||||||    
T  33775024 cattccataagaactccacagttaagtgtgtttgacttgcag----tagtctttggatgggtgacctactgagaagttt 33774950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 21311639 - 21311683
Alignment:
Q  11 cattccataagaactccacagttaagcgtgcttgacttggagtag 55  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||    
T  21311639 cattccataagaactccgcagttaagcgtgcttgactttgagtag 21311683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 15929696 - 15929735
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtg 40  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  15929696 ttcggtagctcattccataagaactccacagttaagcgtg 15929735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 17731141 - 17731090
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| |||||  ||||||||||||| |||||||||||||||||||||    
T  17731141 ttcggtagctcattctttaagaactccacatttaagcgtgcttgacttggag 17731090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 5 - 52
Target Start/End: Complemental strand, 20896716 - 20896669
Alignment:
Q  5 gtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||| ||||||||||||||||||| |||||||||||||| |||||||    
T  20896716 gtagctcattccataagaactccacggttaagcgtgcttggcttggag 20896669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 2681248 - 2681206
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgctt 43  Q
    ||||||||| |||||||||||||||||||| ||||||||||||    
T  2681248 ttcggtagctcattccataagaactccacaattaagcgtgctt 2681206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 2891322 - 2891271
Alignment:
Q  4 ggtagcacattccataagaactccacagttaagcgtgcttgacttggagtag 55  Q
    |||||| |||||||||| ||||||||||||||  |||||||| |||||||||    
T  2891322 ggtagcccattccataaaaactccacagttaaatgtgcttgatttggagtag 2891271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 9440341 - 9440290
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| || |||||||||||| |||||||||| |||||||| ||||||    
T  9440341 ttcggtagctcactccataagaacttcacagttaagtgtgcttgatttggag 9440290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 14771740 - 14771697
Alignment:
Q  12 attccataagaactccacagttaagcgtgcttgacttggagtag 55  Q
    ||||||||||||||||||||||||| ||||| ||| ||||||||    
T  14771740 attccataagaactccacagttaagtgtgctagacgtggagtag 14771697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 23986349 - 23986298
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| ||  ||||||||||| |||||||||| |||||||||||||||    
T  23986349 ttcggtagctcaaaccataagaacttcacagttaagtgtgcttgacttggag 23986298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 20732692 - 20732746
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggagtag 55  Q
    ||||||||| ||||| |||| ||||| || |||||| ||||||||||||||||||    
T  20732692 ttcggtagcccattcaataaaaactctacggttaagagtgcttgacttggagtag 20732746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 55
Target Start/End: Original strand, 3652658 - 3652691
Alignment:
Q  22 aactccacagttaagcgtgcttgacttggagtag 55  Q
    |||||||||||||||| |||||||||||||||||    
T  3652658 aactccacagttaagcttgcttgacttggagtag 3652691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 12194452 - 12194493
Alignment:
Q  11 cattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||||||||||||||||||||| || ||||| |||||    
T  12194452 cattccataagaactccacagttaagcatgtttgacatggag 12194493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 21312088 - 21312136
Alignment:
Q  4 ggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    |||||| |||| |||||||| |||| |||||| ||||||||||||||||    
T  21312088 ggtagcccatttcataagaaatccatagttaaacgtgcttgacttggag 21312136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 2193930 - 2193981
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  2193930 ttcggtagctcattccataagaactccacagttaagcgtgcttgacttggag 2193981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 2474073 - 2474124
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  2474073 ttcggtagctcattccataagaactccacagttaagcgtgcttgacttggag 2474124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 2474519 - 2474570
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  2474519 ttcggtagctcattccataagaactccacagttaagcgtgcttgacttggag 2474570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 8642066 - 8642015
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  8642066 ttcggtagctcattccataagaactccacagttaagcgtgcttgacttggag 8642015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 4 - 92
Target Start/End: Complemental strand, 29680136 - 29680052
Alignment:
Q  4 ggtagcacattccataagaactccacagttaagcgtgcttgacttggagtagctagtctttggatggatggccttctgagaagtttccc 92  Q
    |||||| |||| ||||||||||||||||||||||||| |||||||||||    |||||||||||||| || ||||| ||||||||||||    
T  29680136 ggtagcccattacataagaactccacagttaagcgtgtttgacttggag----tagtctttggatgggtgaccttccgagaagtttccc 29680052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 39147056 - 39147107
Alignment:
Q  4 ggtagcacattccataagaactccacagttaagcgtgcttgacttggagtag 55  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  39147056 ggtagcccattccataagaactccacagttaagcgtgcttgacttggagtag 39147107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 189182 - 189233
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||||||||    
T  189182 ttcggtagctcattccataagaactccacagttaagcatgcttgacttggag 189233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 4 - 92
Target Start/End: Original strand, 1822023 - 1822107
Alignment:
Q  4 ggtagcacattccataagaactccacagttaagcgtgcttgacttggagtagctagtctttggatggatggccttctgagaagtttccc 92  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||||||||    ||||||||||| || ||| | | ||||||||||    
T  1822023 ggtagcccattccataagaactccacatttaagcgtgcttgacttggagtag----tctttggatgggtgacctaccgggaagtttccc 1822107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 10927432 - 10927381
Alignment:
Q  4 ggtagcacattccataagaactccacagttaagcgtgcttgacttggagtag 55  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  10927432 ggtagcccattccataagaactccacagttaaacgtgcttgacttggagtag 10927381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 34371726 - 34371777
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||||||||    
T  34371726 ttcggtagctcattccataagaacaccacagttaagcgtgcttgacttggag 34371777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 34372182 - 34372233
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  34372182 ttcggtagctcattccataagaacttcacagttaagcgtgcttgacttggag 34372233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 42788678 - 42788627
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  42788678 ttcggtagctcattccacaagaactccacagttaagcgtgcttgacttggag 42788627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 17445486 - 17445436
Alignment:
Q  2 tcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  17445486 tcggtagctcattccataagaaatccacagttaagcgtgcttgacttggag 17445436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 4 - 102
Target Start/End: Complemental strand, 27646864 - 27646770
Alignment:
Q  4 ggtagcacattccataagaactccacagttaagcgtgcttgacttggagtagctagtctttggatggatggccttctgagaagtttcccaaaaaacgtg 102  Q
    |||||| |||| ||||||||||||||||||||||||||||| |||||||    ||||||||| |||| || ||| | | |||||||||||| |||||||    
T  27646864 ggtagcccatttcataagaactccacagttaagcgtgcttgtcttggag----tagtctttgcatgggtgacctaccgggaagtttcccaataaacgtg 27646770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 10926968 - 10926924
Alignment:
Q  11 cattccataagaactccacagttaagcgtgcttgacttggagtag 55  Q
    ||||||||||||||||||||||||| |||||||||||||||||||    
T  10926968 cattccataagaactccacagttaaacgtgcttgacttggagtag 10926924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 3886633 - 3886582
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| |||||||||||||||||||||||||||||| ||||| |||||    
T  3886633 ttcggtagctcattccataagaactccacagttaagcgtgtttgacgtggag 3886582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 3887089 - 3887038
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||| | ||||||||||||||| ||||||||||||||||||||||||||    
T  3887089 ttcggtaactcattccataagaacttcacagttaagcgtgcttgacttggag 3887038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 8391354 - 8391303
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    |||||||||  ||||||||||||||||| |||||||||||||||||||||||    
T  8391354 ttcggtagctaattccataagaactccatagttaagcgtgcttgacttggag 8391303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 21886178 - 21886127
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| |||||||||||||||||| ||||||| |||||||||||||||    
T  21886178 ttcggtagctcattccataagaactccaaagttaagtgtgcttgacttggag 21886127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 11757313 - 11757266
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgactt 48  Q
    ||||||||  || |||||||||||||||||||||||||||||||||||    
T  11757313 ttcggtagttcaatccataagaactccacagttaagcgtgcttgactt 11757266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 18304545 - 18304596
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| ||||||||||||| ||||||||||||| || |||||||||||    
T  18304545 ttcggtagctcattccataagaattccacagttaagcatgtttgacttggag 18304596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 20039504 - 20039453
Alignment:
Q  4 ggtagcacattccataagaactccacagttaagcgtgcttgacttggagtag 55  Q
    |||||| |||||||||||||||| ||||||||| ||||||||||| ||||||    
T  20039504 ggtagcccattccataagaactctacagttaagtgtgcttgacttagagtag 20039453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 4102910 - 4102961
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| ||  ||||||||||| ||||||||| ||||||||||||||||    
T  4102910 ttcggtagcccaaaccataagaacttcacagttaaacgtgcttgacttggag 4102961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 52
Target Start/End: Complemental strand, 20858569 - 20858522
Alignment:
Q  5 gtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||| |||||||||||||||||| |||||||  ||||||||||||||    
T  20858569 gtagctcattccataagaactccatagttaaggttgcttgacttggag 20858522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 22557083 - 22557134
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| |||||  |||||||| ||||||||||||||| ||||||||||    
T  22557083 ttcggtagctcattctttaagaacttcacagttaagcgtgcctgacttggag 22557134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 34867904 - 34867951
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgactt 48  Q
    ||||||||| |||| ||||||||||||| |||||||||||||| ||||    
T  34867904 ttcggtagctcatttcataagaactccatagttaagcgtgcttaactt 34867951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 49
Target Start/End: Complemental strand, 15513034 - 15512996
Alignment:
Q  11 cattccataagaactccacagttaagcgtgcttgacttg 49  Q
    |||||||||||||||||||| |||| |||||||||||||    
T  15513034 cattccataagaactccacaattaaacgtgcttgacttg 15512996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 100 - 142
Target Start/End: Complemental strand, 17445348 - 17445306
Alignment:
Q  100 gtggagtcagtcgacaatcctaaaagtcgtctgagatgttaca 142  Q
    |||| |||||||||||||||||||||||| ||| |||||||||    
T  17445348 gtggggtcagtcgacaatcctaaaagtcgcctgggatgttaca 17445306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 30684574 - 30684537
Alignment:
Q  15 ccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  30684574 ccataagaactccacagttaagcgtgctcaacttggag 30684537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 39)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 2911212 - 2911263
Alignment:
Q  4 ggtagcacattccataagaactccacagttaagcgtgcttgacttggagtag 55  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  2911212 ggtagctcattccataagaactccacagttaagcgtgcttgacttggagtag 2911263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 13150586 - 13150535
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  13150586 ttcggtagctcattccataagaactccacagttaagcgtgcttgacttggag 13150535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 25238713 - 25238662
Alignment:
Q  4 ggtagcacattccataagaactccacagttaagcgtgcttgacttggagtag 55  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  25238713 ggtagcccattccataagaactccacagttaagcgtgcttgacttggagtag 25238662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 28561860 - 28561911
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  28561860 ttcggtagctcattccataagaactccacagttaagcgtgcttgacttggag 28561911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 31284308 - 31284257
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  31284308 ttcggtagctcattccataagaactccacagttaagcgtgcttgacttggag 31284257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 5 - 55
Target Start/End: Complemental strand, 20885145 - 20885095
Alignment:
Q  5 gtagcacattccataagaactccacagttaagcgtgcttgacttggagtag 55  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  20885145 gtagcacattccataagaactccacaattaagcgtgcttgacttggagtag 20885095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 4067389 - 4067324
Alignment:
Q  4 ggtagcacattccataagaactccacagttaagcgtgcttgacttggagtagctagtctttggatggatg 73  Q
    |||||| |||| |||||||||||||||||||||||||||||||||||||    |||||||||||||||||    
T  4067389 ggtagctcattacataagaactccacagttaagcgtgcttgacttggag----tagtctttggatggatg 4067324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 50347863 - 50347911
Alignment:
Q  4 ggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  50347863 ggtagctcattccataagaactccacagttaagcgtgcttgacttggag 50347911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 8067394 - 8067445
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| |||||||||||||||||| |||||||||||||||||||||||    
T  8067394 ttcggtagctcattccataagaactccatagttaagcgtgcttgacttggag 8067445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 11180066 - 11180015
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  11180066 ttcggtagctcatttcataagaactccacagttaagcgtgcttgacttggag 11180015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 5 - 52
Target Start/End: Complemental strand, 13150127 - 13150080
Alignment:
Q  5 gtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  13150127 gtagctcattccataagaactccacagttaagcgtgcttgacttggag 13150080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 14814063 - 14814114
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| | ||||||||||||||||||||||||||||||||||||||||    
T  14814063 ttcggtagctcgttccataagaactccacagttaagcgtgcttgacttggag 14814114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 16811495 - 16811546
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  16811495 ttcggtagctcattccataagaattccacagttaagcgtgcttgacttggag 16811546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 32227614 - 32227665
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  32227614 ttcggtagctcatttcataagaactccacagttaagcgtgcttgacttggag 32227665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 37045160 - 37045203
Alignment:
Q  12 attccataagaactccacagttaagcgtgcttgacttggagtag 55  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  37045160 attccataagaactccacagttaagcgtgcttgacttggagtag 37045203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 14820268 - 14820318
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttgga 51  Q
    ||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  14820268 ttcggtagctcgttccataagaactccacagttaagcgtgcttgacttgga 14820318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 4 - 93
Target Start/End: Original strand, 30529804 - 30529888
Alignment:
Q  4 ggtagcacattccataagaactccacagttaagcgtgcttgacttggagtagctagtctttggatggatggccttctgagaagtttccca 93  Q
    |||||| ||||||||||||||| || |||||||||||||||||||||||    |||||||||||||| || ||| ||| |||||||||||    
T  30529804 ggtagcccattccataagaacttcatagttaagcgtgcttgacttggag----tagtctttggatgggtgacctactg-gaagtttccca 30529888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 32227250 - 32227202
Alignment:
Q  4 ggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    |||||| |||| |||||||||||||||||||||||||||||||||||||    
T  32227250 ggtagctcatttcataagaactccacagttaagcgtgcttgacttggag 32227202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 12 - 52
Target Start/End: Complemental strand, 32386755 - 32386715
Alignment:
Q  12 attccataagaactccacagttaagcgtgcttgacttggag 52  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  32386755 attccataagaactccacagttaagcgtgcttgacttggag 32386715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 39641054 - 39641102
Alignment:
Q  4 ggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    |||||| |||||||||||||||||||||||||||||| |||||||||||    
T  39641054 ggtagctcattccataagaactccacagttaagcgtgtttgacttggag 39641102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 25230277 - 25230226
Alignment:
Q  4 ggtagcacattccataagaactccacagttaagcgtgcttgacttggagtag 55  Q
    |||||| ||||| |||||||||||||||||| ||||||||||||||||||||    
T  25230277 ggtagcccattcaataagaactccacagttatgcgtgcttgacttggagtag 25230226  T

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Target: chr3; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 25230734 - 25230683
Alignment:
Q  4 ggtagcacattccataagaactccacagttaagcgtgcttgacttggagtag 55  Q
    |||||| |||||||||||||||| ||| ||||||||||||||||||||||||    
T  25230734 ggtagcccattccataagaactcaacaattaagcgtgcttgacttggagtag 25230683  T

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Target: chr3; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 25237864 - 25237813
Alignment:
Q  4 ggtagcacattccataagaactccacagttaagcgtgcttgacttggagtag 55  Q
    |||||| ||||| |||||||||||||||||| ||||||||||||||||||||    
T  25237864 ggtagcccattcaataagaactccacagttatgcgtgcttgacttggagtag 25237813  T

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Target: chr3; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 25238321 - 25238270
Alignment:
Q  4 ggtagcacattccataagaactccacagttaagcgtgcttgacttggagtag 55  Q
    |||||| |||||||||||||||| ||| ||||||||||||||||||||||||    
T  25238321 ggtagcccattccataagaactcaacaattaagcgtgcttgacttggagtag 25238270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 27187362 - 27187315
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgactt 48  Q
    ||||||||| |||| |||||||||||||||||||||||||||||||||    
T  27187362 ttcggtagctcatttcataagaactccacagttaagcgtgcttgactt 27187315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 39653278 - 39653329
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| |||||||| ||||||||||||||||| |||||||||||||||    
T  39653278 ttcggtagctcattccatgagaactccacagttaagtgtgcttgacttggag 39653329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 25802580 - 25802526
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggagtag 55  Q
    |||| |||| ||||||||||||| |||||||||||||||| ||||||||||||||    
T  25802580 ttcgatagcccattccataagaaatccacagttaagcgtgtttgacttggagtag 25802526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 25248228 - 25248279
Alignment:
Q  4 ggtagcacattccataagaactccacagttaagcgtgcttgacttggagtag 55  Q
    |||||| |||||||||| |||||||| ||| |||||||||||||||||||||    
T  25248228 ggtagcccattccataataactccacggttcagcgtgcttgacttggagtag 25248279  T

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Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 7493995 - 7494047
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggagt 53  Q
    ||||||||| ||  |||||||||||||||| |||||| |||||||||||||||    
T  7493995 ttcggtagcccaaaccataagaactccacatttaagcatgcttgacttggagt 7494047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 16811039 - 16811087
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttg 49  Q
    ||||||||| ||||||||||||||| |||| ||||| ||||||||||||    
T  16811039 ttcggtagctcattccataagaacttcacatttaagtgtgcttgacttg 16811087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 25239106 - 25239070
Alignment:
Q  4 ggtagcacattccataagaactccacagttaagcgtg 40  Q
    |||||| ||||||||||||||||||||||||||||||    
T  25239106 ggtagcccattccataagaactccacagttaagcgtg 25239070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 41472414 - 41472462
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttg 49  Q
    ||||||||  ||||||||||||||||||| ||||| |||||||||||||    
T  41472414 ttcggtagatcattccataagaactccacggttaaacgtgcttgacttg 41472462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 25803036 - 25802952
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggagtagctagtctttggatggatggccttctgagaagttt 89  Q
    ||||||| | |||| ||||||||||||  ||||||||||||||||||||||    |||||||| |||||| || |||| ||||| ||||    
T  25803036 ttcggtatcccatttcataagaactccgtagttaagcgtgcttgacttgga----ctagtcttaggatgggtgaccttatgagatgttt 25802952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 29224438 - 29224489
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| ||  ||||||||||| |||| |||||||||||||||||||||    
T  29224438 ttcggtagcccaaaccataagaacttcacaattaagcgtgcttgacttggag 29224489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 7477305 - 7477359
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggagtag 55  Q
    ||||||||| ||  |||||||||||||||| |||||| |||||||||| ||||||    
T  7477305 ttcggtagcccaaaccataagaactccacatttaagcatgcttgacttagagtag 7477359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 51
Target Start/End: Original strand, 15381258 - 15381294
Alignment:
Q  15 ccataagaactccacagttaagcgtgcttgacttgga 51  Q
    |||||||||||||||| ||||| ||||||||||||||    
T  15381258 ccataagaactccacatttaagtgtgcttgacttgga 15381294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 51
Target Start/End: Original strand, 15396493 - 15396529
Alignment:
Q  15 ccataagaactccacagttaagcgtgcttgacttgga 51  Q
    |||||||||||||||| ||||| ||||||||||||||    
T  15396493 ccataagaactccacatttaagtgtgcttgacttgga 15396529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 51
Target Start/End: Original strand, 15410629 - 15410665
Alignment:
Q  15 ccataagaactccacagttaagcgtgcttgacttgga 51  Q
    |||||||||||||||| ||||| ||||||||||||||    
T  15410629 ccataagaactccacatttaagtgtgcttgacttgga 15410665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 51
Target Start/End: Original strand, 41474121 - 41474161
Alignment:
Q  11 cattccataagaactccacagttaagcgtgcttgacttgga 51  Q
    ||||| |||| ||||||||||| ||||||||||||||||||    
T  41474121 cattctataaaaactccacagtcaagcgtgcttgacttgga 41474161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0389 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0389
Description:

Target: scaffold0389; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 13565 - 13518
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgactt 48  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  13565 ttcggtagctcattccataagaactccacagttaagcgtgcttgactt 13518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0322 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0322
Description:

Target: scaffold0322; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 19080 - 19131
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  19080 ttcggtagctcatttcataagaactccacagttaagcgtgcttgacttggag 19131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 18156 - 18113
Alignment:
Q  12 attccataagaactccacagttaagcgtgcttgacttggagtag 55  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  18156 attccataagaactccacagttaagcgtgcttgacttggagtag 18113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 16 - 54
Target Start/End: Complemental strand, 17615 - 17577
Alignment:
Q  16 cataagaactccacagttaagcgtgcttgacttggagta 54  Q
    |||||||||||||||||||||||||||||||||||||||    
T  17615 cataagaactccacagttaagcgtgcttgacttggagta 17577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 5 - 52
Target Start/End: Original strand, 154875 - 154922
Alignment:
Q  5 gtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  154875 gtagctcattccataagaactccacagttaagcgtgcttgacttggag 154922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0333 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0333
Description:

Target: scaffold0333; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 5135 - 5186
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| |||| |||||||||||||||||||||||||||| ||||||||    
T  5135 ttcggtagctcatttcataagaactccacagttaagcgtgcttaacttggag 5186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0333; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 4675 - 4726
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| ||||  |||||||||||||||||||| |||||| ||||||||    
T  4675 ttcggtagctcattttataagaactccacagttaagtgtgcttaacttggag 4726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 245676 - 245713
Alignment:
Q  15 ccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||||||||||||||||||||||||||||||||    
T  245676 ccataagaactccacagttaagcgtgcttgacttggag 245713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 46
Target Start/End: Original strand, 245643 - 245674
Alignment:
Q  15 ccataagaactccacagttaagcgtgcttgac 46  Q
    ||||||||||||||||||||||||||||||||    
T  245643 ccataagaactccacagttaagcgtgcttgac 245674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0557 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0557
Description:

Target: scaffold0557; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 2222 - 2273
Alignment:
Q  4 ggtagcacattccataagaactccacagttaagcgtgcttgacttggagtag 55  Q
    |||||| |||||| |||||||||||||||||||| |||||||| ||||||||    
T  2222 ggtagcccattccttaagaactccacagttaagcatgcttgacatggagtag 2273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 2242 - 2191
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    |||||||||  ||||||||||||||| | |||||||||||||||||||||||    
T  2242 ttcggtagcttattccataagaactcaatagttaagcgtgcttgacttggag 2191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 100 - 144
Target Start/End: Complemental strand, 2103 - 2059
Alignment:
Q  100 gtggagtcagtcgacaatcctaaaagtcgtctgagatgttacatc 144  Q
    |||| |||||||||||||||||||||| ||||| |||||||||||    
T  2103 gtggggtcagtcgacaatcctaaaagttgtctgggatgttacatc 2059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 142
Target Start/End: Complemental strand, 2554 - 2517
Alignment:
Q  105 gtcagtcgacaatcctaaaagtcgtctgagatgttaca 142  Q
    |||||||||||||||||||||| ||||| |||||||||    
T  2554 gtcagtcgacaatcctaaaagttgtctgggatgttaca 2517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 7070 - 7107
Alignment:
Q  15 ccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  7070 ccataagaactccacagttaagcatgcttgacttggag 7107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0217 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 424 - 475
Alignment:
Q  1 ttcggtagcacattccataagaactccacagttaagcgtgcttgacttggag 52  Q
    ||||||||| |||||||||| | ||||| ||||||||||||||||| |||||    
T  424 ttcggtagctcattccataaaatctccatagttaagcgtgcttgacatggag 475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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