View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6604_low_6 (Length: 422)

Name: NF6604_low_6
Description: NF6604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6604_low_6
NF6604_low_6
[»] chr5 (2 HSPs)
chr5 (16-415)||(8478139-8478538)
chr5 (16-407)||(8486607-8486998)


Alignment Details
Target: chr5 (Bit Score: 392; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 16 - 415
Target Start/End: Original strand, 8478139 - 8478538
Alignment:
Q  16 tcaagaagacggagagcacctgtagcaacaacatcagcagtgtaatcaggaatctcaaacgaaaccgcgacgtgtgactgtgcagcgagattgtaaactt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8478139 tcaagaagacggagagcacctgtagcaacaacatcagcagtgtaatcgggaatctcaaacgaaaccgcgacgtgtgactgtgcagcgagattgtaaactt 8478238  T
Q  116 cgtcggggagaatagtgtcgagccagcgacggagagaggaagcgtcggagagatcggcgtagtgaagcttcatatgagctttgtgagcgttgtgtggatc 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8478239 cgtcggggagaatagtgtcgagccagcgacggagagaggaagcgtcggagagatcggcgtagtgaagcttcatatgagctttgtgagcgttgtgtggatc 8478338  T
Q  216 gacatagatgtgatcgattcgttgtgtgttgaagtttgatgaacggcgaattaggccgtggacggagtagcctttgttgaggaggaattccgttaggtat 315  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8478339 gacatagatgtgatcgattcgttgtgtgttgaagtttgaagaacggcgaattaggccgtggacggagtagcctttgttgaggaggaattccgttaggtat 8478438  T
Q  316 gatccgtcttggcctgtgattccggtgattaatgcgactttacgcggtggaggagtggtgtcgccgtttgttgttgacggtgctggggtttttgatgatg 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8478439 gatccgtcttggcctgtgattccggtgattaatgcgactttacgcggtggaggagtggtgtcgccgtttgttgttgacggtgctggggtttttgatgatg 8478538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 16 - 407
Target Start/End: Original strand, 8486607 - 8486998
Alignment:
Q  16 tcaagaagacggagagcacctgtagcaacaacatcagcagtgtaatcaggaatctcaaacgaaaccgcgacgtgtgactgtgcagcgagattgtaaactt 115  Q
    |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||| ||||| ||||||||||    
T  8486607 tcaagaagacggagagcaccagtagcaacaacatctgcagtgtaatcaggaatctcaaacgaaaccgcgacatgagactgtgcggcgaggttgtaaactt 8486706  T
Q  116 cgtcggggagaatagtgtcgagccagcgacggagagaggaagcgtcggagagatcggcgtagtgaagcttcatatgagctttgtgagcgttgtgtggatc 215  Q
    |||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||    
T  8486707 cgtcagggaggatagtgtcgagccagcgacggagagcggaagcgtcggagagatcggcatagtgaagcttcatatgagctttgtgagcgtcgtgtggatc 8486806  T
Q  216 gacatagatgtgatcgattcgttgtgtgttgaagtttgatgaacggcgaattaggccgtggacggagtagcctttgttgaggaggaattccgttaggtat 315  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  8486807 gacatagatgtgatcaattcgttgtgtgttgaagtttgacgaacgacgaattaggccgtggacggagtagcctttgttgaggaggaattctgttaggtat 8486906  T
Q  316 gatccgtcttggcctgtgattccggtgattaatgcgactttacgcggtggaggagtggtgtcgccgtttgttgttgacggtgctggggtttt 407  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||| |||||||||    
T  8486907 gatccgtcttggcctgtgattccggtgattaatgcgactttccgcggtggtggagtggtgtcgccgtttgttgttgatggtgttggggtttt 8486998  T

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