View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6605_high_3 (Length: 247)

Name: NF6605_high_3
Description: NF6605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6605_high_3
NF6605_high_3
[»] chr4 (10 HSPs)
chr4 (17-247)||(11468444-11468674)
chr4 (17-247)||(11522787-11523017)
chr4 (20-158)||(11507160-11507298)
chr4 (21-158)||(11445561-11445698)
chr4 (21-158)||(11547392-11547529)
chr4 (21-164)||(34783973-34784116)
chr4 (21-165)||(34775752-34775896)
chr4 (163-208)||(34775915-34775960)
chr4 (163-243)||(11445458-11445538)
chr4 (163-243)||(11547552-11547632)
[»] scaffold0794 (1 HSPs)
scaffold0794 (20-158)||(1817-1955)


Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-128; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 17 - 247
Target Start/End: Complemental strand, 11468674 - 11468444
Alignment:
Q  17 agtagatgcaatccacaaacatggaaagcctatgactgttcctgaattagcctcatctttgaaacttcacccttctaaagttagtgtcctatataggttc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11468674 agtagatgcaatccacaaacatggaaagcctatgactgttcctgaattagcctcatctttgaaacttcacccttctaaagttagtgtcctatataggttc 11468575  T
Q  117 ttgcgcttgctaacacacgatggtttcttcgcaaaaacaacagtgaaagaagaaacagcttatgctctcacacctccttcaaagcttctcatcaatggtg 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11468574 ttgcgcttgctaacacacgatggtttcttcgcaaaaacaacagtgaaagaagaaacagcttatgctctcacacctccttcaaagcttctcatcaatggtg 11468475  T
Q  217 aatcaacttgttttgcaccacttgttaaggg 247  Q
    |||||||||||||||||||||||||||||||    
T  11468474 aatcaacttgttttgcaccacttgttaaggg 11468444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 17 - 247
Target Start/End: Original strand, 11522787 - 11523017
Alignment:
Q  17 agtagatgcaatccacaaacatggaaagcctatgactgttcctgaattagcctcatctttgaaacttcacccttctaaagttagtgtcctatataggttc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11522787 agtagatgcaatccacaaacatggaaagcctatgactgttcctgaattagcctcatctttgaaacttcacccttctaaagttagtgtcctatataggttc 11522886  T
Q  117 ttgcgcttgctaacacacgatggtttcttcgcaaaaacaacagtgaaagaagaaacagcttatgctctcacacctccttcaaagcttctcatcaatggtg 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11522887 ttgcgcttgctaacacacgatggtttcttcgcaaaaacaacagtgaaagaagaaacagcttatgctctcacacctccttcaaagcttctcatcaatggtg 11522986  T
Q  217 aatcaacttgttttgcaccacttgttaaggg 247  Q
    |||||||||||||||||||||||||||||||    
T  11522987 aatcaacttgttttgcaccacttgttaaggg 11523017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 20 - 158
Target Start/End: Original strand, 11507160 - 11507298
Alignment:
Q  20 agatgcaatccacaaacatggaaagcctatgactgttcctgaattagcctcatctttgaaacttcacccttctaaagttagtgtcctatataggttcttg 119  Q
    |||||||||||| || |||||||| || |||||| || |||||||||| |||||||||||||| ||||||||||||||||||||||| ||| |  |||||    
T  11507160 agatgcaatccaaaaccatggaaaaccaatgactcttactgaattagcttcatctttgaaactccacccttctaaagttagtgtcctttatcgtctcttg 11507259  T
Q  120 cgcttgctaacacacgatggtttcttcgcaaaaacaaca 158  Q
    ||||||||||||||| |||||||||| || |||||||||    
T  11507260 cgcttgctaacacacaatggtttctttgcgaaaacaaca 11507298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 21 - 158
Target Start/End: Complemental strand, 11445698 - 11445561
Alignment:
Q  21 gatgcaatccacaaacatggaaagcctatgactgttcctgaattagcctcatctttgaaacttcacccttctaaagttagtgtcctatataggttcttgc 120  Q
    |||||||||||||| |||||||| || |||||| || |||||||||| |||||||||||||| || ||||| |||||||||||||| ||| |  ||||||    
T  11445698 gatgcaatccacaaccatggaaaaccaatgactcttactgaattagcttcatctttgaaactccatccttcgaaagttagtgtcctgtatcgtctcttgc 11445599  T
Q  121 gcttgctaacacacgatggtttcttcgcaaaaacaaca 158  Q
    || ||||||||||| |||||||||| ||||||||||||    
T  11445598 gcctgctaacacacaatggtttctttgcaaaaacaaca 11445561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 21 - 158
Target Start/End: Original strand, 11547392 - 11547529
Alignment:
Q  21 gatgcaatccacaaacatggaaagcctatgactgttcctgaattagcctcatctttgaaacttcacccttctaaagttagtgtcctatataggttcttgc 120  Q
    |||||||||||||| |||||||| || |||||| || |||||||||| |||||||||||||| || ||||| |||||||||||||| ||| |  ||||||    
T  11547392 gatgcaatccacaaccatggaaaaccaatgactcttactgaattagcttcatctttgaaactccatccttcgaaagttagtgtcctgtatcgtctcttgc 11547491  T
Q  121 gcttgctaacacacgatggtttcttcgcaaaaacaaca 158  Q
    || ||||||||||| |||||||||| ||||||||||||    
T  11547492 gcctgctaacacacaatggtttctttgcaaaaacaaca 11547529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 21 - 164
Target Start/End: Original strand, 34783973 - 34784116
Alignment:
Q  21 gatgcaatccacaaacatggaaagcctatgactgttcctgaattagcctcatctttgaaacttcacccttctaaagttagtgtcctatataggttcttgc 120  Q
    ||||||||||| || |||||||| || |||||| || ||||||||||||||||||| ||||| ||||||||||||||||   |||| ||| | ||||| |    
T  34783973 gatgcaatccataaccatggaaaaccaatgactctttctgaattagcctcatctttaaaactccacccttctaaagttaacatcctctatcgattcttac 34784072  T
Q  121 gcttgctaacacacgatggtttcttcgcaaaaacaacagtgaaa 164  Q
    || |  |||||||| |||| |||||  |||||||||||||||||    
T  34784073 gccttttaacacacaatggcttctttacaaaaacaacagtgaaa 34784116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 165
Target Start/End: Original strand, 34775752 - 34775896
Alignment:
Q  21 gatgcaatccacaaacatggaaagcctatgactgttcctgaattagcctcatctttgaaacttcacccttctaaagttagtgtcctatataggttcttgc 120  Q
    |||||||| ||||| |||||||| || |||||| || ||||| |||||||||||||||||||||||||||||||||||| | | ||  |  | ||||| |    
T  34775752 gatgcaattcacaaccatggaaaaccaatgactctttctgaactagcctcatctttgaaacttcacccttctaaagttaatatacttcaccgattcttac 34775851  T
Q  121 gcttgctaacacacgatggtttcttcgcaaaaacaacagtgaaag 165  Q
    || |  |||||||  |||||||||| |||||||||| ||||||||    
T  34775852 gccttttaacacataatggtttctttgcaaaaacaatagtgaaag 34775896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 208
Target Start/End: Original strand, 34775915 - 34775960
Alignment:
Q  163 aagaagaaacagcttatgctctcacacctccttcaaagcttctcat 208  Q
    ||||||||| ||| ||| ||||||||||||||||||||||||||||    
T  34775915 aagaagaaatagcatattctctcacacctccttcaaagcttctcat 34775960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 243
Target Start/End: Complemental strand, 11445538 - 11445458
Alignment:
Q  163 aagaagaaacagcttatgctctcacacctccttcaaagcttctcatcaatggtgaatcaacttgttttgcaccacttgtta 243  Q
    ||||||||||| | ||| ||||||| |||||||||| ||||||||| | |||  ||||||| |||||  ||||| ||||||    
T  11445538 aagaagaaacaacatattctctcactcctccttcaatgcttctcataagtggcaaatcaacatgtttgtcaccatttgtta 11445458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 243
Target Start/End: Original strand, 11547552 - 11547632
Alignment:
Q  163 aagaagaaacagcttatgctctcacacctccttcaaagcttctcatcaatggtgaatcaacttgttttgcaccacttgtta 243  Q
    ||||||||||| | ||| ||||||| |||||||||| ||||||||| | |||  ||||||| |||||  ||||| ||||||    
T  11547552 aagaagaaacaacatattctctcactcctccttcaatgcttctcataagtggcaaatcaacatgtttgtcaccatttgtta 11547632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0794 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: scaffold0794
Description:

Target: scaffold0794; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 20 - 158
Target Start/End: Original strand, 1817 - 1955
Alignment:
Q  20 agatgcaatccacaaacatggaaagcctatgactgttcctgaattagcctcatctttgaaacttcacccttctaaagttagtgtcctatataggttcttg 119  Q
    |||||||||||| || |||||||| || |||||| || |||||||||| |||||||||||||| ||||||||||||||||||||||| ||| |  |||||    
T  1817 agatgcaatccaaaaccatggaaaaccaatgactcttactgaattagcttcatctttgaaactccacccttctaaagttagtgtcctttatcgtctcttg 1916  T
Q  120 cgcttgctaacacacgatggtttcttcgcaaaaacaaca 158  Q
    ||||||||||||||| |||||||||| || |||||||||    
T  1917 cgcttgctaacacacaatggtttctttgcgaaaacaaca 1955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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