View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6605_low_1 (Length: 405)
Name: NF6605_low_1
Description: NF6605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6605_low_1 |
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| [»] scaffold0650 (1 HSPs) |
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Alignment Details
Target: scaffold0650 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: scaffold0650
Description:
Target: scaffold0650; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 19 - 394
Target Start/End: Original strand, 7347 - 7732
Alignment:
| Q |
19 |
tattcatgtgtattgcttcctttcgacaaagattgctggtaccccatatatataa----------tccatattactgcatggttttcattgaatttccat |
108 |
Q |
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|||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||| | ||||| |||||||||||||||||| |
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| T |
7347 |
tattcatgtgtattgcttccttgcgacatagattgctggtaccccatatatatatatatatattttccatattgccgcatgattttcattgaatttccat |
7446 |
T |
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| Q |
109 |
tgattggaattaaacaaacaccttgccgtgtcaacctattcaaattggtgtgcaaatatattggtgcggttgctgtacgtgttgtttgagttctaagagt |
208 |
Q |
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||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
7447 |
tgattggaattaaacaaacacctagccgtgtcaacccattcaaattggtgtgcaaatatattggtgcggttgctgtacgtgttgtttgagttctaagact |
7546 |
T |
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| Q |
209 |
accttgctgctacttgtgaaaaatggaaaacacactgtcattgtgcttcactataaatatattaatcgtcacaactcacaatttcctcttccaannnnnn |
308 |
Q |
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||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
7547 |
accttgctgctacttgtgaaaaatgaaaaacgcactgtcattgtggttcactataaatatattaattgtcacaactcacaatttcctcttccaatttttt |
7646 |
T |
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| Q |
309 |
nngaaggagatttccttgtacaagtatttaatatttatttgttacattgatttttcgcttacaacttcgtcgattatgaccttctt |
394 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
7647 |
ctgaaggagatttcctcgtacaagtatttaatatttatttgttacattgatttttcgcttacagcttcgtcgattatgaccttctt |
7732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 19 - 394
Target Start/End: Original strand, 18432250 - 18432635
Alignment:
| Q |
19 |
tattcatgtgtattgcttcctttcgacaaagattgctggtaccccatatatataa----------tccatattactgcatggttttcattgaatttccat |
108 |
Q |
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|||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||| | ||||| |||||||||||||||||| |
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| T |
18432250 |
tattcatgtgtattgcttccttgcgacatagattgctggtaccccatatatatatatatatattttccatattgccgcatgattttcattgaatttccat |
18432349 |
T |
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| Q |
109 |
tgattggaattaaacaaacaccttgccgtgtcaacctattcaaattggtgtgcaaatatattggtgcggttgctgtacgtgttgtttgagttctaagagt |
208 |
Q |
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||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
18432350 |
tgattggaattaaacaaacacctagccgtgtcaacccattcaaattggtgtgcaaatatattggtgcggttgctgtacgtgttgtttgagttctaagact |
18432449 |
T |
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| Q |
209 |
accttgctgctacttgtgaaaaatggaaaacacactgtcattgtgcttcactataaatatattaatcgtcacaactcacaatttcctcttccaannnnnn |
308 |
Q |
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| T |
18432450 |
accttgctgctacttgtgaaaaatgaaaaacgcactgtcattgtggttcactataaatatattaattgtcacaactcacaatttcctcttccaatttttt |
18432549 |
T |
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| Q |
309 |
nngaaggagatttccttgtacaagtatttaatatttatttgttacattgatttttcgcttacaacttcgtcgattatgaccttctt |
394 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
18432550 |
ctgaaggagatttcctcgtacaagtatttaatatttatttgttacattgatttttcgcttacagcttcgtcgattatgaccttctt |
18432635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 219 - 394
Target Start/End: Original strand, 18444826 - 18445001
Alignment:
| Q |
219 |
tacttgtgaaaaatggaaaacacactgtcattgtgcttcactataaatatattaatcgtcacaactcacaatttcctcttccaannnnnnnngaaggaga |
318 |
Q |
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||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |
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| T |
18444826 |
tacttgtgaaaaatgaaaaacgcactgtcattgtggttcactataaatatattaattgtcacaactcacaatttcctcttccaatttttggtgaaggaga |
18444925 |
T |
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| Q |
319 |
tttccttgtacaagtatttaatatttatttgttacattgatttttcgcttacaacttcgtcgattatgaccttctt |
394 |
Q |
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| T |
18444926 |
tttcctcctacaagtatttaatatttatttgttacattgatttttcgctcacaacttcgtcgattatgaccttctt |
18445001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 219 - 394
Target Start/End: Original strand, 18436653 - 18436827
Alignment:
| Q |
219 |
tacttgtgaaaaatggaaaacacactgtcattgtgcttcactataaatatattaatcgtcacaactcacaatttcctcttccaannnnnnnngaaggaga |
318 |
Q |
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||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |
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| T |
18436653 |
tacttgtgaaaaatgaaaaacgcactgtcattgtggatcactataaatatattaattgtcacaactcacaatttcctcttccaattttcggtgaaggag- |
18436751 |
T |
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| Q |
319 |
tttccttgtacaagtatttaatatttatttgttacattgatttttcgcttacaacttcgtcgattatgaccttctt |
394 |
Q |
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| T |
18436752 |
tttcctcgtacaagtatttaatatttatttgttacattgatttttcgcttacagcttcgtcgattatgaccttctt |
18436827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 219 - 391
Target Start/End: Original strand, 18440928 - 18441100
Alignment:
| Q |
219 |
tacttgtgaaaaatggaaaacacactgtcattgtgcttcactataaatatattaatcgtcacaactcacaatttcctcttccaannnnnnnngaaggaga |
318 |
Q |
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||||||||||||||| ||||| |||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||| |
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| T |
18440928 |
tacttgtgaaaaatgaaaaacgcactgtcattatggatcactataaatatattaattgtcacaactcacaatttcctcttccaattttcggtgaagaaga |
18441027 |
T |
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| Q |
319 |
tttccttgtacaagtatttaatatttatttgttacattgatttttcgcttacaacttcgtcgattatgacctt |
391 |
Q |
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|||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |
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| T |
18441028 |
tttcctcgtataagtatttaatatttatttgttacattgatttttcgcttacaccttcgtcgattatcacctt |
18441100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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