View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6605_low_2 (Length: 352)
Name: NF6605_low_2
Description: NF6605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6605_low_2 |
 | |
|
| [»] scaffold0028 (2 HSPs) |
| | |
|
| [»] scaffold0482 (1 HSPs) |
| | |
|
| [»] scaffold0040 (2 HSPs) |
| | |
|
| [»] scaffold0233 (1 HSPs) |
| | |
|
| [»] scaffold0001 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 283; Significance: 1e-158; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 23895979 - 23896325
Alignment:
| Q |
1 |
gagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgacctt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
23895979 |
gagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactttgagagatattagcttacaaaactcttgcttatgacctt |
23896078 |
T |
|
| Q |
101 |
caaaggcccttgtatttataggtgaggagtgtcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||| || ||||| |
|
|
| T |
23896079 |
caaaggcccttgtatttataggtgaggagtgtcttggtgatcaagggagaaaatagagctgttggacacgtttttgatagttgtccaaagtctcaattga |
23896178 |
T |
|
| Q |
201 |
tttctcttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctggctttgaaagcattgttgc-ttgcttgcgcatgagataa |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
23896179 |
tttctcttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctggctttgaaagcactgttgctttgcttgcgcatgagataa |
23896278 |
T |
|
| Q |
300 |
ccagttgtagtgagctgtataacttgttgcccaatgttgatgatgtc |
346 |
Q |
| |
|
|||| |||| |||||||||||||||| |||||| | |||||||||| |
|
|
| T |
23896279 |
ccagctgtaatgagctgtataacttgctgcccacttctgatgatgtc |
23896325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 18420377 - 18420031
Alignment:
| Q |
1 |
gagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgacctt |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18420377 |
gagagagctttgaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgacctt |
18420278 |
T |
|
| Q |
101 |
caaaggcccttgtatttataggtgaggagtgtcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||| ||||| |||||||||| || ||||| |
|
|
| T |
18420277 |
caaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattga |
18420178 |
T |
|
| Q |
201 |
tttctcttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctggctttgaaagcattgttgc-ttgcttgcgcatgagataa |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||| ||||||||||||||||||| |
|
|
| T |
18420177 |
tttctcttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataa |
18420078 |
T |
|
| Q |
300 |
ccagttgtagtgagctgtataacttgttgcccaatgttgatgatgtc |
346 |
Q |
| |
|
|||| ||| |||||||||||||||| ||||| | |||||||||| |
|
|
| T |
18420077 |
ccagctgtgatgagctgtataacttgcagcccacttctgatgatgtc |
18420031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 29 - 247
Target Start/End: Complemental strand, 14101988 - 14101770
Alignment:
| Q |
29 |
gaagagctttgtttgtagtgatgattttcactttgagaga-tattagcttgcaaaactcttgcttatgaccttcaaaggcccttgtatttataggtgagg |
127 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||| |||| | |||| |||| ||||||||||| | | || |||||| | |||||||||||||||||| |
|
|
| T |
14101988 |
gaagagttttgtatgtagtgatgattttcactt-gagataatatttgctttaaaaactcttgcatttaacattcaaaaccaattgtatttataggtgagg |
14101890 |
T |
|
| Q |
128 |
agtgtcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattgatttctcttttcttctttaaaatagcca |
227 |
Q |
| |
|
|||| ||||||||||||| | ||||||| || ||||||| ||||| | || ||||||||| ||| ||||||||| ||||||||| |||||| | | |
|
|
| T |
14101889 |
agtgccttggtgatcaagagtgaaaatagagttgttggatacgtttttggcagctgtccaaagcttcaattgatttcacttttcttcattaaaacgggaa |
14101790 |
T |
|
| Q |
228 |
gaacgttctcagaatgttct |
247 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
14101789 |
gaacgttctcagaatgttct |
14101770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 22489011 - 22488666
Alignment:
| Q |
1 |
gagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgacctt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22489011 |
gagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcacttagagagatattagcttgcaaaactcttgcttatgacctt |
22488912 |
T |
|
| Q |
101 |
caaaggcccttgtatttataggtgaggagtgtcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattga |
200 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||| |||||||||| || ||||| |
|
|
| T |
22488911 |
caaagacccttgtatttataggtgaggagtgtcttggtgatcaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattga |
22488812 |
T |
|
| Q |
201 |
tttctcttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctggctttgaaagcattgttgcttgcttgcgcatgagataac |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
22488811 |
tttctcttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctggctttgaaagcactgttgcttgcttgcacatgagataac |
22488712 |
T |
|
| Q |
301 |
cagttgtagtgagctgtataacttgttgcccaatgttgatgatgtc |
346 |
Q |
| |
|
||| |||| |||||||||||||||| |||| |||| |||||||||| |
|
|
| T |
22488711 |
cagctgtaatgagctgtataacttgctgcctaatgctgatgatgtc |
22488666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 24412653 - 24412307
Alignment:
| Q |
1 |
gagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgacctt |
100 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24412653 |
gagagagcttggaatttgctttgtatgtgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgacctt |
24412554 |
T |
|
| Q |
101 |
caaaggcccttgtatttataggtgaggagtgtcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||| ||||| |||||||||| || ||||| |
|
|
| T |
24412553 |
caaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattga |
24412454 |
T |
|
| Q |
201 |
tttctcttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctggctttgaaagcattgttgc-ttgcttgcgcatgagataa |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||| ||||||||||||||||||| |
|
|
| T |
24412453 |
tttctcttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataa |
24412354 |
T |
|
| Q |
300 |
ccagttgtagtgagctgtataacttgttgcccaatgttgatgatgtc |
346 |
Q |
| |
|
|||| ||| |||||||||||||||| ||||| | |||||||||| |
|
|
| T |
24412353 |
ccagctgtgatgagctgtataacttgcagcccacttctgatgatgtc |
24412307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 30445192 - 30445538
Alignment:
| Q |
1 |
gagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgacctt |
100 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
30445192 |
gagagagcttggaatttgctttgtatgtgaagagctttgtttgtagtgatgattttcactttgagagatattagctttcaaaactcttgcttatgacctt |
30445291 |
T |
|
| Q |
101 |
caaaggcccttgtatttataggtgaggagtgtcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||| ||||| |||||||||| || |||| |
|
|
| T |
30445292 |
caaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttga |
30445391 |
T |
|
| Q |
201 |
tttctcttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctggctttgaaagcattgttgc-ttgcttgcgcatgagataa |
299 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
30445392 |
tttctcttttcttcttaaaaatagccagaacgttctcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataa |
30445491 |
T |
|
| Q |
300 |
ccagttgtagtgagctgtataacttgttgcccaatgttgatgatgtc |
346 |
Q |
| |
|
|||| |||| |||||||||||||||| ||||| | |||||||||| |
|
|
| T |
30445492 |
ccagctgtaatgagctgtataacttgcagcccacttctgatgatgtc |
30445538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 30454564 - 30454910
Alignment:
| Q |
1 |
gagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgacctt |
100 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
30454564 |
gagagagcttggaatttgctttgtatgtgaagagctttgtttgtagtgatgattttcactttgagagatattagctttcaaaactcttgcttatgacctt |
30454663 |
T |
|
| Q |
101 |
caaaggcccttgtatttataggtgaggagtgtcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||| ||||| |||||||||| || |||| |
|
|
| T |
30454664 |
caaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttga |
30454763 |
T |
|
| Q |
201 |
tttctcttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctggctttgaaagcattgttgc-ttgcttgcgcatgagataa |
299 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
30454764 |
tttctcttttcttcttaaaaatagccagaacgttctcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataa |
30454863 |
T |
|
| Q |
300 |
ccagttgtagtgagctgtataacttgttgcccaatgttgatgatgtc |
346 |
Q |
| |
|
|||| |||| |||||||||||||||| ||||| | |||||||||| |
|
|
| T |
30454864 |
ccagctgtaatgagctgtataacttgcagcccacttctgatgatgtc |
30454910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 30459622 - 30459968
Alignment:
| Q |
1 |
gagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgacctt |
100 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
30459622 |
gagagagcttggaatttgctttgtatgtgaagagctttgtttgtagtgatgattttcactttgagagatattagctttcaaaactcttgcttatgacctt |
30459721 |
T |
|
| Q |
101 |
caaaggcccttgtatttataggtgaggagtgtcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||| ||||| |||||||||| || |||| |
|
|
| T |
30459722 |
caaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttga |
30459821 |
T |
|
| Q |
201 |
tttctcttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctggctttgaaagcattgttgc-ttgcttgcgcatgagataa |
299 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
30459822 |
tttctcttttcttcttaaaaatagccagaacgttctcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataa |
30459921 |
T |
|
| Q |
300 |
ccagttgtagtgagctgtataacttgttgcccaatgttgatgatgtc |
346 |
Q |
| |
|
|||| |||| |||||||||||||||| ||||| | |||||||||| |
|
|
| T |
30459922 |
ccagctgtaatgagctgtataacttgcagcccacttctgatgatgtc |
30459968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 18568863 - 18568538
Alignment:
| Q |
1 |
gagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgacctt |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
18568863 |
gagagagcttggaatttgctttgtatgcgaagagctttgtttgtagtgatgattttcactttgagagatattagctttcaaaactcttgcttatgacctt |
18568764 |
T |
|
| Q |
101 |
caaaggcccttgtatttataggtgaggagtgtcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||| ||||| |||||||||| || |||| |
|
|
| T |
18568763 |
caaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttga |
18568664 |
T |
|
| Q |
201 |
tttctcttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctggctttgaaagcattgttgc-ttgcttgcgcatgagataa |
299 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
18568663 |
tttctcttttcttcttaaaaatagccagaacgttctcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataa |
18568564 |
T |
|
| Q |
300 |
ccagttgtagtgagctgtataacttg |
325 |
Q |
| |
|
|||| |||| |||||||| ||||||| |
|
|
| T |
18568563 |
ccagctgtaatgagctgtgtaacttg |
18568538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 34 - 346
Target Start/End: Complemental strand, 4635754 - 4635442
Alignment:
| Q |
34 |
gctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgaccttcaaaggcccttgtatttataggtgaggagtgtc |
133 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
4635754 |
gctttgtttgcagtgatgattttcacttagagagatattagcttgcaaaactctagcttatgaccttcaaagacccttgtatttataggtgaggagtgtc |
4635655 |
T |
|
| Q |
134 |
ttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattgatttctcttttcttctttaaaatagccagaacgt |
233 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| | ||||| |||||||||||||||| || |||||||| ||||||||||||||||||||| |||| || |
|
|
| T |
4635654 |
ttggtgatcaagggagaaaatagagctgttggatgcgtttttgatagttgtccaaagtctcaattgatttttcttttcttctttaaaatagctagaatgt |
4635555 |
T |
|
| Q |
234 |
tctcagaatgttctttctgatttgcctggctttgaaagcattgttgcttgcttgcgcatgagataaccagttgtagtgagctgtataacttgttgcccaa |
333 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| | |||||||||||||| ||||| ||||||||||| |||| ||||||||||||||| || |
|
|
| T |
4635554 |
tctcaaaatgttctttctgatttgcctggctttgaaagcactattgcttgcttgcgcgtgagagaaccagttgtaatgagttgtataacttgttgcgcac |
4635455 |
T |
|
| Q |
334 |
tgttgatgatgtc |
346 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
4635454 |
tgctgatgatgtc |
4635442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 24422102 - 24421767
Alignment:
| Q |
1 |
gagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgacctt |
100 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24422102 |
gagagagcttggaatttgctttgtatgtgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgacctt |
24422003 |
T |
|
| Q |
101 |
caaaggcccttgtatttataggtgaggagtgtcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||| ||||| ||||| |||||||||| || ||||| |
|
|
| T |
24422002 |
caaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgctggacacgtttttgatagctgtccaaagtctcaattga |
24421903 |
T |
|
| Q |
201 |
tttctcttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctggctttgaaagcattgttgc-ttgcttgcgcatgagataa |
299 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||| |||||| ||||||||||||||||||| |
|
|
| T |
24421902 |
tttctcttttcttctttaaaatagcc-----------agaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataa |
24421814 |
T |
|
| Q |
300 |
ccagttgtagtgagctgtataacttgttgcccaatgttgatgatgtc |
346 |
Q |
| |
|
|||| ||| |||||||||||||||| ||||| | |||||||||| |
|
|
| T |
24421813 |
ccagctgtgatgagctgtataacttgcagcccacttctgatgatgtc |
24421767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 144 - 335
Target Start/End: Original strand, 24278813 - 24279004
Alignment:
| Q |
144 |
agggagaaaatatagctgttggacgtgtttta-gatagttgtccaaagtttctattgatttctcttttcttctttaaaa-tagccagaacgttctcagaa |
241 |
Q |
| |
|
|||||||||||| || |||||||| ||||| ||||| |||||||| | || ||||||||||| ||||||||||||| ||||||||||||||||| || |
|
|
| T |
24278813 |
agggagaaaatagagttgttggacacgttttttgatagctgtccaaaatctcagttgatttctctcttcttctttaaaaatagccagaacgttctca-aa |
24278911 |
T |
|
| Q |
242 |
tgttctttctgatttgcctggctttgaaagcattgttgcttgcttgcgcatgagataaccagttgtagtgagctgtataacttgttgcccaatg |
335 |
Q |
| |
|
|||| | |||||||||||| ||||| ||||||||||||||||| |||||||| |||||||||| ||| |||| | ||||||||||||||| |
|
|
| T |
24278912 |
tgttgtgtctgatttgcctaactttgcttgcattgttgcttgcttgtgcatgagagtaccagttgtaatgaactgt-ttacttgttgcccaatg |
24279004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 144 - 335
Target Start/End: Complemental strand, 24383401 - 24383210
Alignment:
| Q |
144 |
agggagaaaatatagctgttggacgtgtttta-gatagttgtccaaagtttctattgatttctcttttcttctttaaaa-tagccagaacgttctcagaa |
241 |
Q |
| |
|
|||||||||||| || |||||||| ||||| ||||| |||||||| | || ||||||||||| ||||||||||||| ||||||||||||||||| || |
|
|
| T |
24383401 |
agggagaaaatagagttgttggacacgttttttgatagctgtccaaaatctcagttgatttctctcttcttctttaaaaatagccagaacgttctca-aa |
24383303 |
T |
|
| Q |
242 |
tgttctttctgatttgcctggctttgaaagcattgttgcttgcttgcgcatgagataaccagttgtagtgagctgtataacttgttgcccaatg |
335 |
Q |
| |
|
|||| | |||||||||||| ||||| ||||||||||||||||| |||||||| |||||||||| ||| |||| | ||||||||||||||| |
|
|
| T |
24383302 |
tgttgtgtctgatttgcctaactttgcttgcattgttgcttgcttgtgcatgagagtaccagttgtaatgaactgt-ttacttgttgcccaatg |
24383210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 3 - 88
Target Start/End: Original strand, 22118460 - 22118545
Alignment:
| Q |
3 |
gagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactttgagag-atattagcttgcaaaactctt |
88 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||||| |||||||||||||||||| ||||||| ||||| |||| |||||||||| |
|
|
| T |
22118460 |
gagagcttggaatttgatttgtttgtgaagagctttgtatgtagtgatgattttcac-ttgagagaatatttgctttcaaaactctt |
22118545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 15843260 - 15843605
Alignment:
| Q |
1 |
gagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgacctt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15843260 |
gagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcacttagagagatattagcttgcaaaactcttgcttatgacctt |
15843359 |
T |
|
| Q |
101 |
caaaggcccttgtatttataggtgaggagtgtcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||| ||| |||||| || ||||| |
|
|
| T |
15843360 |
caaaggcccttgtatttataggtgaggagtgtcttggtgatcaagggagaaaatagagctgttggacacgttttttatagctgttcaaagtctcaattga |
15843459 |
T |
|
| Q |
201 |
tttctcttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctggctttgaaagcattgttgcttgcttgcgcatgagataac |
300 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
15843460 |
tttctcttttcttctttaaaatagccataacgttctcataatgttctttctgatttgcctggctttgaaagcactgttgcttgcttgcgcatgagataac |
15843559 |
T |
|
| Q |
301 |
cagttgtagtgagctgtataacttgttgcccaatgttgatgatgtc |
346 |
Q |
| |
|
||| |||| |||||||||||| ||| ||||||||| |||||||||| |
|
|
| T |
15843560 |
cagctgtaatgagctgtataatttgctgcccaatgctgatgatgtc |
15843605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 3242650 - 3242996
Alignment:
| Q |
1 |
gagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgacctt |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3242650 |
gagagagcttggaatttgctttgtatgcgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgacctt |
3242749 |
T |
|
| Q |
101 |
caaaggcccttgtatttataggtgaggagtgtcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||| ||||| |||||||||| || ||||| |
|
|
| T |
3242750 |
caaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattga |
3242849 |
T |
|
| Q |
201 |
tttctcttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctggctttgaaagcattgttgc-ttgcttgcgcatgagataa |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||| ||||||||||||||||||| |
|
|
| T |
3242850 |
tttctcttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataa |
3242949 |
T |
|
| Q |
300 |
ccagttgtagtgagctgtataacttgttgcccaatgttgatgatgtc |
346 |
Q |
| |
|
|||| ||| |||||||||||||||| ||||| | |||||||||| |
|
|
| T |
3242950 |
ccagctgtgatgagctgtataacttgcagcccacttctgatgatgtc |
3242996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 3917891 - 3917545
Alignment:
| Q |
1 |
gagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgacctt |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3917891 |
gagagagcttggaatttgctttgtatgcgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgacctt |
3917792 |
T |
|
| Q |
101 |
caaaggcccttgtatttataggtgaggagtgtcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||| ||||| |||||||||| || ||||| |
|
|
| T |
3917791 |
caaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattga |
3917692 |
T |
|
| Q |
201 |
tttctcttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctggctttgaaagcattgttgc-ttgcttgcgcatgagataa |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||| ||||||||||||||||||| |
|
|
| T |
3917691 |
tttctcttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataa |
3917592 |
T |
|
| Q |
300 |
ccagttgtagtgagctgtataacttgttgcccaatgttgatgatgtc |
346 |
Q |
| |
|
|||| ||| |||||||||||||||| ||||| | |||||||||| |
|
|
| T |
3917591 |
ccagctgtgatgagctgtataacttgcagcccacttctgatgatgtc |
3917545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 26812333 - 26811987
Alignment:
| Q |
1 |
gagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgacctt |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26812333 |
gagagagcttggaatttgctttgtatgcgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgacctt |
26812234 |
T |
|
| Q |
101 |
caaaggcccttgtatttataggtgaggagtgtcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||| ||||| |||||||||| || ||||| |
|
|
| T |
26812233 |
caaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattga |
26812134 |
T |
|
| Q |
201 |
tttctcttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctggctttgaaagcattgttgc-ttgcttgcgcatgagataa |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||| ||||||||||||||||||| |
|
|
| T |
26812133 |
tttctcttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataa |
26812034 |
T |
|
| Q |
300 |
ccagttgtagtgagctgtataacttgttgcccaatgttgatgatgtc |
346 |
Q |
| |
|
|||| ||| |||||||||||||||| ||||| | |||||||||| |
|
|
| T |
26812033 |
ccagctgtgatgagctgtataacttgcagcccacttctgatgatgtc |
26811987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 26821800 - 26821454
Alignment:
| Q |
1 |
gagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgacctt |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26821800 |
gagagagcttggaatttgctttgtatgcgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgacctt |
26821701 |
T |
|
| Q |
101 |
caaaggcccttgtatttataggtgaggagtgtcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||| ||||| |||||||||| || ||||| |
|
|
| T |
26821700 |
caaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattga |
26821601 |
T |
|
| Q |
201 |
tttctcttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctggctttgaaagcattgttgc-ttgcttgcgcatgagataa |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||| ||||||||||||||||||| |
|
|
| T |
26821600 |
tttctcttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataa |
26821501 |
T |
|
| Q |
300 |
ccagttgtagtgagctgtataacttgttgcccaatgttgatgatgtc |
346 |
Q |
| |
|
|||| ||| |||||||||||||||| ||||| | |||||||||| |
|
|
| T |
26821500 |
ccagctgtgatgagctgtataacttgcagcccacttctgatgatgtc |
26821454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 37058912 - 37058566
Alignment:
| Q |
1 |
gagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgacctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37058912 |
gagagagcttggaatttgctttgtttgcgaagagctctgtttgtagtgatgattttcacttagagagatattagcttgcaaaactcttgcttatgacctt |
37058813 |
T |
|
| Q |
101 |
caaaggcccttgtatttataggtgaggagtgtcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||| ||||| |||||||||| || ||||| |
|
|
| T |
37058812 |
caaaggcccttgtatttataggtgaggagtgtcttggtgatcaagggagaaaatagagttgttggacacgtttttgatagctgtccaaagtctcaattga |
37058713 |
T |
|
| Q |
201 |
tttctcttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctggctttgaaagcattgttg-cttgcttgcgcatgagataa |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
37058712 |
tttctcttttcttctttaaaatagccagaacgttctcaaaatgttctttctgatttgcctggctttgaaagcactgttgttttgcttgcgcatgagataa |
37058613 |
T |
|
| Q |
300 |
ccagttgtagtgagctgtataacttgttgcccaatgttgatgatgtc |
346 |
Q |
| |
|
|||| |||| ||||||||||||||| |||||| | |||||||||| |
|
|
| T |
37058612 |
ccagctgtaatgagctgtataactttgtgcccacttctgatgatgtc |
37058566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 54690276 - 54690622
Alignment:
| Q |
1 |
gagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgacctt |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
54690276 |
gagagagcttggaatttgctttgtatgcgaagagctttgtttgtagtgatgattttcactttgagagatattagctttcaaaactcttgcttatgacctt |
54690375 |
T |
|
| Q |
101 |
caaaggcccttgtatttataggtgaggagtgtcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||| ||||| |||||||||| || ||||| |
|
|
| T |
54690376 |
caaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattga |
54690475 |
T |
|
| Q |
201 |
tttctcttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctggctttgaaagcattgttgc-ttgcttgcgcatgagataa |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||| ||||||||||||||||||| |
|
|
| T |
54690476 |
tttctcttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataa |
54690575 |
T |
|
| Q |
300 |
ccagttgtagtgagctgtataacttgttgcccaatgttgatgatgtc |
346 |
Q |
| |
|
|||| ||| |||||||||||||||| ||||| | |||||||||| |
|
|
| T |
54690576 |
ccagctgtgatgagctgtataacttgcagcccacttctgatgatgtc |
54690622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 54699707 - 54700053
Alignment:
| Q |
1 |
gagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgacctt |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
54699707 |
gagagagcttggaatttgctttgtatgcgaagagctttgtttgtagtgatgattttcactttgagagatattagctttcaaaactcttgcttatgacctt |
54699806 |
T |
|
| Q |
101 |
caaaggcccttgtatttataggtgaggagtgtcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||| ||||| |||||||||| || ||||| |
|
|
| T |
54699807 |
caaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattga |
54699906 |
T |
|
| Q |
201 |
tttctcttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctggctttgaaagcattgttgc-ttgcttgcgcatgagataa |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||| ||||||||||||||||||| |
|
|
| T |
54699907 |
tttctcttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataa |
54700006 |
T |
|
| Q |
300 |
ccagttgtagtgagctgtataacttgttgcccaatgttgatgatgtc |
346 |
Q |
| |
|
|||| ||| |||||||||||||||| ||||| | |||||||||| |
|
|
| T |
54700007 |
ccagctgtgatgagctgtataacttgcagcccacttctgatgatgtc |
54700053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 263; Significance: 1e-146; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 15173144 - 15172798
Alignment:
| Q |
1 |
gagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgacctt |
100 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15173144 |
gagagagcatggaattttctttgtttgcgaagagctttgtttgtagtgatgattttcacttagagagatattagcttgcaaaactcttgcttatgacctt |
15173045 |
T |
|
| Q |
101 |
caaaggcccttgtatttataggtgaggagtgtcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||| |||||||||| || ||||| |
|
|
| T |
15173044 |
caaaggcccttgtatttataggtgaggagtgtcttggtgatcaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattga |
15172945 |
T |
|
| Q |
201 |
tttctcttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctggctttgaaagcattgttgc-ttgcttgcgcatgagataa |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
15172944 |
tttctcttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctggctttgaaagcactgttgctttgcttgcgcatgagataa |
15172845 |
T |
|
| Q |
300 |
ccagttgtagtgagctgtataacttgttgcccaatgttgatgatgtc |
346 |
Q |
| |
|
|||| | || |||||||||||||||| ||| || | |||||||||| |
|
|
| T |
15172844 |
ccagctataatgagctgtataacttgctgctcacttctgatgatgtc |
15172798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 7592831 - 7592485
Alignment:
| Q |
1 |
gagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgacctt |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7592831 |
gagagagcttggaatttgctttgtatgcgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgacctt |
7592732 |
T |
|
| Q |
101 |
caaaggcccttgtatttataggtgaggagtgtcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||| ||||| |||||||||| || ||||| |
|
|
| T |
7592731 |
caaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattga |
7592632 |
T |
|
| Q |
201 |
tttctcttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctggctttgaaagcattgttgc-ttgcttgcgcatgagataa |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||| ||||||||||||||||||| |
|
|
| T |
7592631 |
tttctcttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataa |
7592532 |
T |
|
| Q |
300 |
ccagttgtagtgagctgtataacttgttgcccaatgttgatgatgtc |
346 |
Q |
| |
|
|||| ||| |||||||||||||||| ||||| | |||||||||| |
|
|
| T |
7592531 |
ccagctgtgatgagctgtataacttgcagcccacttctgatgatgtc |
7592485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 15202567 - 15202224
Alignment:
| Q |
1 |
gagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgacctt |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
15202567 |
gagagagcttggaatttcctttgtttgcgaagagctttgtttgtagtgatgattttcacttagagagatat---cttgcaaaactcttgcttatgacctt |
15202471 |
T |
|
| Q |
101 |
caaaggcccttgtatttataggtgaggagtgtcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||| ||||| |||||||||| || ||||| |
|
|
| T |
15202470 |
caaaggcccttgtatttataggtgaggagtgtcttggtgatcaagggagaaaatagagttgttggacacgtttttgatagctgtccaaagtctcaattga |
15202371 |
T |
|
| Q |
201 |
tttctcttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctggctttgaaagcattgttgc-ttgcttgcgcatgagataa |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |||||| |||||| ||||||||||||||||||| |
|
|
| T |
15202370 |
tttctcttttcttctttaaaatagccagaacgttctatgaatgttctttctgatttgtctggctttaaaagcactgttgctttgcttgcgcatgagataa |
15202271 |
T |
|
| Q |
300 |
ccagttgtagtgagctgtataacttgttgcccaatgttgatgatgtc |
346 |
Q |
| |
|
|||| |||| |||| ||||||||||| |||||| | |||||||||| |
|
|
| T |
15202270 |
ccagctgtaatgagttgtataacttgctgcccacttctgatgatgtc |
15202224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 107 - 346
Target Start/End: Original strand, 4118893 - 4119133
Alignment:
| Q |
107 |
cccttgtatttataggtgaggagtgtcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattgatttctc |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||| |||||||||| || ||||||||||| |
|
|
| T |
4118893 |
cccttgtatttataggtgaggagtgtcttggtgatcaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctc |
4118992 |
T |
|
| Q |
207 |
ttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctggctttgaaagcattgttgc-ttgcttgcgcatgagataaccagtt |
305 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| | |
|
|
| T |
4118993 |
ttttcttctttaaaatagccaaaacgttctcagaatgttctttctgatttgcctggctttgaaagcactgttgctttgcttgcgcatgagataaccagct |
4119092 |
T |
|
| Q |
306 |
gtagtgagctgtataacttgttgcccaatgttgatgatgtc |
346 |
Q |
| |
|
|| |||||||||||||||||||| || | |||||||||| |
|
|
| T |
4119093 |
ttaatgagctgtataacttgttgctcacttctgatgatgtc |
4119133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 94794 - 95140
Alignment:
| Q |
1 |
gagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgacctt |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
94794 |
gagagagcttggaatttgctttgtatgcgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgacctt |
94893 |
T |
|
| Q |
101 |
caaaggcccttgtatttataggtgaggagtgtcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||| ||||| |||||||||| || ||||| |
|
|
| T |
94894 |
caaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattga |
94993 |
T |
|
| Q |
201 |
tttctcttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctggctttgaaagcattgttgc-ttgcttgcgcatgagataa |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||| ||||||||||||||||||| |
|
|
| T |
94994 |
tttctcttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataa |
95093 |
T |
|
| Q |
300 |
ccagttgtagtgagctgtataacttgttgcccaatgttgatgatgtc |
346 |
Q |
| |
|
|||| ||| |||||||||||||||| ||||| | |||||||||| |
|
|
| T |
95094 |
ccagctgtgatgagctgtataacttgcagcccacttctgatgatgtc |
95140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 104235 - 104581
Alignment:
| Q |
1 |
gagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgacctt |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
104235 |
gagagagcttggaatttgctttgtatgcgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgacctt |
104334 |
T |
|
| Q |
101 |
caaaggcccttgtatttataggtgaggagtgtcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||| ||||| |||||||||| || ||||| |
|
|
| T |
104335 |
caaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattga |
104434 |
T |
|
| Q |
201 |
tttctcttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctggctttgaaagcattgttgc-ttgcttgcgcatgagataa |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||| ||||||||||||||||||| |
|
|
| T |
104435 |
tttctcttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataa |
104534 |
T |
|
| Q |
300 |
ccagttgtagtgagctgtataacttgttgcccaatgttgatgatgtc |
346 |
Q |
| |
|
|||| ||| |||||||||||||||| ||||| | |||||||||| |
|
|
| T |
104535 |
ccagctgtgatgagctgtataacttgcagcccacttctgatgatgtc |
104581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0482 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: scaffold0482
Description:
Target: scaffold0482; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 3358 - 3012
Alignment:
| Q |
1 |
gagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgacctt |
100 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
3358 |
gagagagcttggaatttgctttgtatgtgaagagctttgtttgtagtgatgattttcactttgacagatattagcttacaaaactcttgcttatgacctt |
3259 |
T |
|
| Q |
101 |
caaaggcccttgtatttataggtgaggagtgtcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||| ||||| |||||||||| ||| |||| |
|
|
| T |
3258 |
caaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtatcttttga |
3159 |
T |
|
| Q |
201 |
tttctcttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctggctttgaaagcattgttgc-ttgcttgcgcatgagataa |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
3158 |
tttctcttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataa |
3059 |
T |
|
| Q |
300 |
ccagttgtagtgagctgtataacttgttgcccaatgttgatgatgtc |
346 |
Q |
| |
|
|||| |||| |||||||||||||||| ||||| | |||||||||| |
|
|
| T |
3058 |
ccagctgtaatgagctgtataacttgcagcccacttctgatgatgtc |
3012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 255; Significance: 1e-142; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 7789441 - 7789787
Alignment:
| Q |
1 |
gagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgacctt |
100 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
7789441 |
gagagagcttggaatttgctttgtatgtgaagagctttgtttgtagtgatgattttcactttgacagatattagcttacaaaactcttgcttatgacctt |
7789540 |
T |
|
| Q |
101 |
caaaggcccttgtatttataggtgaggagtgtcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||| ||||| |||||||||| ||| |||| |
|
|
| T |
7789541 |
caaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtatcttttga |
7789640 |
T |
|
| Q |
201 |
tttctcttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctggctttgaaagcattgttgc-ttgcttgcgcatgagataa |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
7789641 |
tttctcttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataa |
7789740 |
T |
|
| Q |
300 |
ccagttgtagtgagctgtataacttgttgcccaatgttgatgatgtc |
346 |
Q |
| |
|
|||| |||| |||||||||||||||| ||||| | |||||||||| |
|
|
| T |
7789741 |
ccagctgtaatgagctgtataacttgcagcccacttctgatgatgtc |
7789787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 20713895 - 20713818
Alignment:
| Q |
1 |
gagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactttgagagatattagcttg |
78 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
20713895 |
gagagagcttggaattttctttgtttgcgaagagctttgtttgtagtgatgattttcacttagagagatattagcttg |
20713818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 15827467 - 15827408
Alignment:
| Q |
1 |
gagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactt |
61 |
Q |
| |
|
|||| ||||||||||||| |||||||| ||| | |||||| |||||||||||||||||||| |
|
|
| T |
15827467 |
gagatagcttggaatttg-tttgtttgtgaaaaactttgtatgtagtgatgattttcactt |
15827408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 15833779 - 15833720
Alignment:
| Q |
1 |
gagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactt |
61 |
Q |
| |
|
||||| ||||| |||||| |||||||| || ||||||||| |||||||||||||||||||| |
|
|
| T |
15833779 |
gagagggcttgcaatttg-tttgtttgtgaggagctttgtatgtagtgatgattttcactt |
15833720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 255; Significance: 1e-142; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 28352084 - 28352430
Alignment:
| Q |
1 |
gagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgacctt |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28352084 |
gagagagcttggaatttgctttgtttgtgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgacctt |
28352183 |
T |
|
| Q |
101 |
caaaggcccttgtatttataggtgaggagtgtcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||| ||||| |||||||||| || ||||| |
|
|
| T |
28352184 |
caaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattga |
28352283 |
T |
|
| Q |
201 |
tttctcttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctggctttgaaagcattgttgc-ttgcttgcgcatgagataa |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||| ||||||||||||||||||| |
|
|
| T |
28352284 |
tttctcttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataa |
28352383 |
T |
|
| Q |
300 |
ccagttgtagtgagctgtataacttgttgcccaatgttgatgatgtc |
346 |
Q |
| |
|
|||| ||| |||| ||||||||||| ||||| | |||||||||| |
|
|
| T |
28352384 |
ccagctgtgatgagttgtataacttgcagcccacttctgatgatgtc |
28352430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 28368017 - 28368362
Alignment:
| Q |
1 |
gagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgacctt |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28368017 |
gagagagcttggaatttgctttgtttgtgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgacctt |
28368116 |
T |
|
| Q |
101 |
caaaggcccttgtatttataggtgaggagtgtcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||| ||||| ||||| |||||||||| || ||||| |
|
|
| T |
28368117 |
caaaggcccttgtatttataggtgaggagtgtcttggt-accaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattga |
28368215 |
T |
|
| Q |
201 |
tttctcttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctggctttgaaagcattgttgc-ttgcttgcgcatgagataa |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||| ||||||||||||||||||| |
|
|
| T |
28368216 |
tttctcttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataa |
28368315 |
T |
|
| Q |
300 |
ccagttgtagtgagctgtataacttgttgcccaatgttgatgatgtc |
346 |
Q |
| |
|
|||| ||| |||||||||||||||| ||||| | |||||||||| |
|
|
| T |
28368316 |
ccagctgtgatgagctgtataacttgcagcccacttctgatgatgtc |
28368362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 28375835 - 28376180
Alignment:
| Q |
1 |
gagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgacctt |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28375835 |
gagagagcttggaatttgctttgtttgtgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgacctt |
28375934 |
T |
|
| Q |
101 |
caaaggcccttgtatttataggtgaggagtgtcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||| ||||| ||||| |||||||||| || ||||| |
|
|
| T |
28375935 |
caaaggcccttgtatttataggtgaggagtgtcttggt-accaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattga |
28376033 |
T |
|
| Q |
201 |
tttctcttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctggctttgaaagcattgttgc-ttgcttgcgcatgagataa |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||| ||||||||||||||||||| |
|
|
| T |
28376034 |
tttctcttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataa |
28376133 |
T |
|
| Q |
300 |
ccagttgtagtgagctgtataacttgttgcccaatgttgatgatgtc |
346 |
Q |
| |
|
|||| ||| |||||||||||||||| ||||| | |||||||||| |
|
|
| T |
28376134 |
ccagctgtgatgagctgtataacttgcagcccacttctgatgatgtc |
28376180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 28383657 - 28384002
Alignment:
| Q |
1 |
gagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgacctt |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28383657 |
gagagagcttggaatttgctttgtttgtgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgacctt |
28383756 |
T |
|
| Q |
101 |
caaaggcccttgtatttataggtgaggagtgtcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||| ||||| ||||| |||||||||| || ||||| |
|
|
| T |
28383757 |
caaaggcccttgtatttataggtgaggagtgtcttggt-accaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattga |
28383855 |
T |
|
| Q |
201 |
tttctcttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctggctttgaaagcattgttgc-ttgcttgcgcatgagataa |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||| ||||||||||||||||||| |
|
|
| T |
28383856 |
tttctcttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataa |
28383955 |
T |
|
| Q |
300 |
ccagttgtagtgagctgtataacttgttgcccaatgttgatgatgtc |
346 |
Q |
| |
|
|||| ||| |||||||||||||||| ||||| | |||||||||| |
|
|
| T |
28383956 |
ccagctgtgatgagctgtataacttgcagcccacttctgatgatgtc |
28384002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 25 - 346
Target Start/End: Original strand, 38529524 - 38529846
Alignment:
| Q |
25 |
ttgcgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgaccttcaaaggcccttgtatttataggtg |
124 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| | |
|
|
| T |
38529524 |
ttgcgaagagctttgtttgtagtgatgattttcacttagagagatattagcttgcaaaactcttgcttataatcttcaaaggcccttgtatttataggcg |
38529623 |
T |
|
| Q |
125 |
aggagtgtcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattgatttc-tcttttcttctttaaaata |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||| || |||||||| ||||| ||||||||||||||| || ||||||||| | ||||||||||||||||| |
|
|
| T |
38529624 |
aggagtgtcttggtgatcaagggagaaaatagagttgttggacacgttttttatagttgtccaaagtctcaattgatttctttttttcttctttaaaata |
38529723 |
T |
|
| Q |
224 |
gccagaacgttctcagaatgttctttctgatttgcctggctttgaaagcattgttgcttgcttgcgcatgagataaccagttgtagtgagctgtataact |
323 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||| ||| ||||||||||| |||||||||||||||| ||||| |||||| |||| |||| ||| ||||| |
|
|
| T |
38529724 |
gccagaccgttctcagaatgttctttctgaattgtctgactttgaaagcactgttgcttgcttgcgcgtgagagaaccagctgtaatgagttgtttaact |
38529823 |
T |
|
| Q |
324 |
tgttgcccaatgttgatgatgtc |
346 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
38529824 |
tgttgcccaatgttgatgatgtc |
38529846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 4951421 - 4951155
Alignment:
| Q |
1 |
gagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactttgagaga-tattagcttgcaaaact-cttgcttatgacc |
98 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||| ||||||||||||| |||||||||||| |||||| |||| ||||||||||| || ||| | ||| |
|
|
| T |
4951421 |
gagagaacttggaatttgctttgtttgcaaagagttttgtttgtagtggtgattttcactt-gagagaatatttacttgcaaaacttctatctt-taacc |
4951324 |
T |
|
| Q |
99 |
ttcaaaggcccttgtatttataggtgaggagtgtcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctatt |
198 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||||||||||||||||||||| || || |||||||| ||||| |||| |||| ||||| || ||| |
|
|
| T |
4951323 |
ttcaaaaccacttgtatttataggtgaggagtgtcttggtgatcaagggagaaactagagttgttggacacgtttttgataactgtctaaagtctcaatt |
4951224 |
T |
|
| Q |
199 |
gatttctcttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctggctttg |
267 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||||||| |||||| | |||||||||| | |||||| |
|
|
| T |
4951223 |
gatttctcttttcttcttaaaaataggaagaacgttctcataatgttatgtctgatttgcatagctttg |
4951155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 43 - 247
Target Start/End: Original strand, 7784561 - 7784764
Alignment:
| Q |
43 |
gtagtgatgattttcactttgagaga-tattagcttgcaaaactcttgcttatgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgat |
141 |
Q |
| |
|
||||||||||||||||||| |||||| || | |||| ||||||||| ||| ||||||| | | |||||||||||||||||| |||| ||||||||| |
|
|
| T |
7784561 |
gtagtgatgattttcactt-gagagaatacttgcttttaaaactcttactttcaaccttcataaccacttgtatttataggtgagcagtgccttggtgat |
7784659 |
T |
|
| Q |
142 |
caagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattgatttctcttttcttctttaaaatagccagaacgttctcagaa |
241 |
Q |
| |
|
|||| | ||||||| | |||||||| |||||| | || | ||||||| ||| ||||||||| |||||||||||| ||| || ||||| ||||| |||| |
|
|
| T |
7784660 |
caagagtgaaaatagtgttgttggacatgtttttggcagctttccaaagcttcaattgatttcacttttcttcttt-aaacagacagaatgttcttagaa |
7784758 |
T |
|
| Q |
242 |
tgttct |
247 |
Q |
| |
|
|||||| |
|
|
| T |
7784759 |
tgttct |
7784764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 27169197 - 27168983
Alignment:
| Q |
1 |
gagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactttgagaga-tattagcttgcaaaactcttgcttatgacct |
99 |
Q |
| |
|
||||||||||| ||||| |||||||| ||||| |||||| |||||||||||||||||||| |||||| | | ||| |||||||||| || |||| |
|
|
| T |
27169197 |
gagagagcttgaaatttt-tttgtttgtgaagaactttgtatgtagtgatgattttcactt-gagagaatgcttactttcaaaactcttatatagaacct |
27169100 |
T |
|
| Q |
100 |
tcaaaggcccttgtatttataggtgaggagtgtcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattg |
199 |
Q |
| |
|
|| | | ||||| ||||||||||||||||| ||||||||||||| | ||||||| || |||||||| |||| || ||||||| | ||| |||| |
|
|
| T |
27169099 |
tctagaccacttgtgtttataggtgaggagtgacttggtgatcaagagtgaaaatagaggtgttggacacgtttagtgcagctgtccaacgattcaattg |
27169000 |
T |
|
| Q |
200 |
atttctcttttcttctt |
216 |
Q |
| |
|
||||| ||||||||||| |
|
|
| T |
27168999 |
atttcacttttcttctt |
27168983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 31710828 - 31711162
Alignment:
| Q |
1 |
gagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgacctt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
31710828 |
gagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcacttagagagatattagcttgcaaaactcttacttatgacctt |
31710927 |
T |
|
| Q |
101 |
caaaggcccttgtatttataggtgaggagtgtcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||| ||||| |||||||||||||||| || ||||| |
|
|
| T |
31710928 |
caaaggcccttgtatttataggtgaggagtgtcttggtgatcaagtgagaaaatagagttgttggacgcgtttttgatagttgtccaaagtctcaattga |
31711027 |
T |
|
| Q |
201 |
tttctcttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctggctttgaaagcattgttgcttgcttgcgcatgagataac |
300 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||| ||| |
|
|
| T |
31711028 |
tttctcttttcttcttaaaaatagc-----------cagaatgttctttctgattttcctggctttgaaagcactgttgcttgcttgcgcgtgagagaac |
31711116 |
T |
|
| Q |
301 |
cagttgtagtgagctgtataacttgttgcccaatgttgatgatgtc |
346 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |||||||||| |
|
|
| T |
31711117 |
cagttgtaatgagctgtataacttgttgcccaatgctgatgatgtc |
31711162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 24023104 - 24023429
Alignment:
| Q |
1 |
gagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgacctt |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||| ||||| |
|
|
| T |
24023104 |
gagagagcttggaatttgctttatttgcgaagagctttgtttgtagtgatgattttcacttagagagatattagcttgcaaaagtcttggttataacctt |
24023203 |
T |
|
| Q |
101 |
caaaggcccttgtatttataggtgaggagtgtcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattga |
200 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||| ||||| ||||| | |||||||| || ||||| |
|
|
| T |
24023204 |
caaaagcccttgtatttataggtgaggagtgtcttagtgatcaagggagaaaatagagttgttggacacgtttttgatagctatccaaagtctcaattga |
24023303 |
T |
|
| Q |
201 |
tttctcttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctggctttgaaagcattgttgcttgcttgcgcatgagataac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||| ||||||||||| |||||||| ||||||| ||||| ||| |
|
|
| T |
24023304 |
tttctcttttcttctttaaaatagccagaacgttcttagaatgttctgtctgaattgccttactttgaaagcactgttgctttcttgcgcgtgagagaac |
24023403 |
T |
|
| Q |
301 |
cagttgtagtgagctgtataacttgt |
326 |
Q |
| |
|
|| |||| |||||||| |||||||| |
|
|
| T |
24023404 |
caactgtaatgagctgtttaacttgt |
24023429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 9 - 346
Target Start/End: Complemental strand, 14272873 - 14272537
Alignment:
| Q |
9 |
ttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactttgagaga-tattagcttgcaaaactcttgcttatgaccttcaaaggc |
107 |
Q |
| |
|
||||| |||| |||||||| |||||| ||||| ||||||||||||||||| || ||||| | || |||| |||||||||| | | | |||||||||| | |
|
|
| T |
14272873 |
ttggagtttgttttgtttgtgaagagttttgtatgtagtgatgattttca-ttcaagagaatgtttgctttcaaaactcttacctttaaccttcaaagac |
14272775 |
T |
|
| Q |
108 |
ccttgtatttataggtgaggagtgtcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattgatttctct |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||| ||||| |||||||||| || |||||||||||| |
|
|
| T |
14272774 |
ccttgtatttataggtgaggagtgtcttggtgatcaagggagaaaatagagttgttggacacgtttttgatagctgtccaaagtctcaattgatttctct |
14272675 |
T |
|
| Q |
208 |
tttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctggctttgaaagcattgttgcttgcttgcgcatgagataaccagttgt |
307 |
Q |
| |
|
||||| ||| |||||||||||||||| |||||||||||| ||||| |||||| ||||||||||||||||||||||||||| | || ||||| ||| |
|
|
| T |
14272674 |
tttctacttataaatagccagaacgttttcagaatgttctgtctgaattgcctaactttgaaagcattgttgcttgcttgcgagggggagaaccaactgt |
14272575 |
T |
|
| Q |
308 |
agtgagctgtataacttgttgcccaatgttgatgatgtc |
346 |
Q |
| |
|
| |||| ||| | |||||||||||||||||||| ||||| |
|
|
| T |
14272574 |
aatgagttgt-ttacttgttgcccaatgttgattatgtc |
14272537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0040 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: scaffold0040
Description:
Target: scaffold0040; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 34 - 346
Target Start/End: Original strand, 31203 - 31516
Alignment:
| Q |
34 |
gctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgaccttcaaaggcccttgtatttataggtgaggagtgtc |
133 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31203 |
gctttgtttgtagtgatgattttcacttagagagatattagcttgcaaaactcttgcttatgaccttcaaaggcccttgtatttataggtgaggagtgtc |
31302 |
T |
|
| Q |
134 |
ttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattgatttctcttttcttctttaaaatagccagaacgt |
233 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||| ||||| ||||| |||||||||| || |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31303 |
ttggtgaacaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagccagaacgt |
31402 |
T |
|
| Q |
234 |
tctcagaatgttctttctgatttgcctggctttgaaagcattgttgc-ttgcttgcgcatgagataaccagttgtagtgagctgtataacttgttgccca |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||| |||| |||||||||||||||| |||||| |
|
|
| T |
31403 |
tctcagaatgttctttctgatttgcctggctttgaaagcactgttgctttgcttgcacatgagataaccagctgtaatgagctgtataacttgctgccca |
31502 |
T |
|
| Q |
333 |
atgttgatgatgtc |
346 |
Q |
| |
|
| |||||||||| |
|
|
| T |
31503 |
cttctgatgatgtc |
31516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0040; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 9871 - 9535
Alignment:
| Q |
1 |
gagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactttgagaga-tattagcttgcaaaactcttgcttatgacct |
99 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |||| ||| |||||||||||| | | |||| |
|
|
| T |
9871 |
gagagagcttgaaatttgctttgtttgcgaagagctttgtttgtagtgatgtttttcactt-gagagaatattttctttcaaaactcttgcctttaacct |
9773 |
T |
|
| Q |
100 |
tcaaaggcccttgtatttataggtgaggagtgtcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattg |
199 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||||||||||||| ||||||| || || ||||| |||| ||||| |||||||||| || ||| |
|
|
| T |
9772 |
tcaaaactatttgtatatataggtgaggagtgtcttggtgatcaagggtgaaaatagagttgatggacacatttttgatagctgtccaaagtctcatttg |
9673 |
T |
|
| Q |
200 |
atttctcttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctggctttgaaagcattgttgcttgcttgcgcatgagataa |
299 |
Q |
| |
|
|||| ||||||||||| |||||||| ||||||||||||||||||||| |||||||||||| |||||| || ||||||||||||||| ||| | || |
|
|
| T |
9672 |
ttttcacttttcttcttaaaaatagctagaacgttctcagaatgttctgtctgatttgcctagctttgcttgctctgttgcttgcttgcgagtgaaagaa |
9573 |
T |
|
| Q |
300 |
ccagttgtagtgagctgtataacttgttgcccaatgtt |
337 |
Q |
| |
|
|||| | || |||| ||| ||| ||||||| ||||||| |
|
|
| T |
9572 |
ccagctataatgagttgtttaaattgttgctcaatgtt |
9535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0233 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: scaffold0233
Description:
Target: scaffold0233; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 34 - 346
Target Start/End: Original strand, 26500 - 26812
Alignment:
| Q |
34 |
gctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgaccttcaaaggcccttgtatttataggtgaggagtgtc |
133 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26500 |
gctttgtttgtagtgatgattttcacttagagagatattagcttgcaaaactcttacttatgaccttcaaaggcccttgtatttataggtgaggagtgtc |
26599 |
T |
|
| Q |
134 |
ttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattgatttctcttttcttctttaaaatagccagaacgt |
233 |
Q |
| |
|
|||||||||||||||||||||| || |||||||| |||| ||||| | |||||||| || |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26600 |
ttggtgatcaagggagaaaatagagatgttggacacatttttgatagctatccaaagtctcaattgatttctcttttcttctttaaaatagccagaacgt |
26699 |
T |
|
| Q |
234 |
tctcagaatgttctttctgatttgcctggctttgaaagcattgttgcttgcttgcgcatgagataaccagttgtagtgagctgtataacttgttgcccaa |
333 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||| ||| ||| |||| |||||||||||||||| ||||||| |
|
|
| T |
26700 |
tctcagaatgttctttctgatttgtctggctttgaaagcactgttgcttgtatgcgcatgagttaatcagctgtaatgagctgtataacttgctgcccaa |
26799 |
T |
|
| Q |
334 |
tgttgatgatgtc |
346 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
26800 |
tgctgatgatgtc |
26812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 38 - 346
Target Start/End: Complemental strand, 413086 - 412777
Alignment:
| Q |
38 |
tgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgaccttcaaaggcccttgtatttataggtgaggagtgtcttgg |
137 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
413086 |
tgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgaccttcaaaggcccttgtatttataggtgaggagtgtcttgg |
412987 |
T |
|
| Q |
138 |
tgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattgatttctcttttcttctttaaaatagccagaacgttctc |
237 |
Q |
| |
|
|||||||||||||||||| || |||||||| |||| ||||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
412986 |
tgatcaagggagaaaatagagttgttggactcttttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagccagaacgttctc |
412887 |
T |
|
| Q |
238 |
agaatgttctttctgatttgcctggctttgaaagcattgttgc-ttgcttgcgcatgagataaccagttgtagtgagctgtataacttgttgcccaatgt |
336 |
Q |
| |
|
| |||||||||||||||||| ||| ||||||||||| | |||| |||||||| |||||||||||||| |||| |||||||||||||||| |||||| | |
|
|
| T |
412886 |
ataatgttctttctgatttgtctgactttgaaagcactattgctttgcttgcacatgagataaccagctgtaatgagctgtataacttgctgcccacttc |
412787 |
T |
|
| Q |
337 |
tgatgatgtc |
346 |
Q |
| |
|
|||||||||| |
|
|
| T |
412786 |
tgatgatgtc |
412777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 111; Significance: 6e-56; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 1 - 334
Target Start/End: Original strand, 15810343 - 15810676
Alignment:
| Q |
1 |
gagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactttgagag-atattagcttgcaaaactcttgcttatgacct |
99 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||| ||||||| ||||| ||| |||||||||||| | | | | |
|
|
| T |
15810343 |
gagagagcttgaaatttgctttgtttgcgaggagctttgtttgtagtgatgtttttcac-ttgagagaatattttctttcaaaactcttgcctttaaaat |
15810441 |
T |
|
| Q |
100 |
tcaaaggcccttgtatttataggtgaggagtgtcttggtgatcaagggagaaaatatagctgttggacgtgttttagatagttgtccaaagtttctattg |
199 |
Q |
| |
|
||||| | ||||||||||||||||| |||||||||||||||||| || | ||||| || |||||||| |||| ||||| |||||||||| |||| |
|
|
| T |
15810442 |
tcaaaaccacttgtatttataggtgatgagtgtcttggtgatcaatggtgcaaatagagttgttggacacatttttgatagctgtccaaagtcctaattg |
15810541 |
T |
|
| Q |
200 |
atttctcttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctggctttgaaagcattgttgcttgcttgcgcatgagataa |
299 |
Q |
| |
|
||||| |||||||||| ||||||| ||||| | |||||||||||| | |||||||||| | ||||| ||| ||||||||||||||| ||||| || |
|
|
| T |
15810542 |
atttcatttttcttcttaaaaatagacagaatgatctcagaatgttatgtctgatttgcataactttgcttgcactgttgcttgcttgcgagtgagagaa |
15810641 |
T |
|
| Q |
300 |
ccagttgtagtgagctgtataacttgttgcccaat |
334 |
Q |
| |
|
|||| |||| |||||||| | ||||||||| |||| |
|
|
| T |
15810642 |
ccagctgtaatgagctgttttacttgttgctcaat |
15810676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 96 - 261
Target Start/End: Original strand, 41000835 - 41001003
Alignment:
| Q |
96 |
accttcaaaggcccttgtatttataggtgaggagtgtcttggtgatcaagggagaaaatatagctgttggac---gtgttttagatagttgtccaaagtt |
192 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||| ||||||||||||| | ||||||| || |||||||| | |||| |||| |||||||||| |
|
|
| T |
41000835 |
accttcaaaaccacttgtatttataggtgaggagtgccttggtgatcaagagtgaaaatagagatgttggacacgtttttttttatagatgtccaaagtc |
41000934 |
T |
|
| Q |
193 |
tctattgatttctcttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctg |
261 |
Q |
| |
|
|| |||||||| ||||||||||| ||| | | ||||| | |||||||||||| | ||||||||||||| |
|
|
| T |
41000935 |
tcatttgatttcacttttcttcttaaaattgggcagaaagatctcagaatgttatgtctgatttgcctg |
41001003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 40999395 - 40999455
Alignment:
| Q |
1 |
gagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactt |
61 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
40999395 |
gagagagcttggaatttactttgtttgcgaagagctttgtatgtagtgatgtttttcactt |
40999455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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