View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6605_low_3 (Length: 332)
Name: NF6605_low_3
Description: NF6605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6605_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 2 - 305
Target Start/End: Complemental strand, 45313565 - 45313275
Alignment:
| Q |
2 |
ttgtatggtaggattatttttagtttctatcatcttttgaatgttgactatcacttttaactgtgcttcagaacttaacttgttaacaatctccctagct |
101 |
Q |
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| T |
45313565 |
ttgtatggtaggattatttttagtttctatcatcttttgaatgttgactatcacttttaactgtgcttcagaacttaacttgttaacaatctccctagct |
45313466 |
T |
|
| Q |
102 |
tgtggatatattctgaaatagtattaaattaagctaatgttattgttgcttgtttatgtctctatcatgtctaacttagatattccttccttgtttatct |
201 |
Q |
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| T |
45313465 |
tgtgtatatattctgaaatagtattaaattaagctaatgtt-------------tatgtctctatcatgtctaacttagatattccttctttgtttatct |
45313379 |
T |
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| Q |
202 |
tctaatgttatgtttatcacgtctaataatggcattagagtaaatcatccttaaagcacttaaatatttcttttgttttcaaacttttctgctgcttacc |
301 |
Q |
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| T |
45313378 |
tctaattttatgtttatcacgtctaataatggcattagagtaaatcatccttaaagcacttaaatatttcttttgttttcaaacttttctgctgcttacc |
45313279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 205 - 273
Target Start/End: Complemental strand, 45310405 - 45310338
Alignment:
| Q |
205 |
aatgttatgtttatcacgtctaataatggcattagagtaaatcatccttaaagcacttaaatatttctt |
273 |
Q |
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| T |
45310405 |
aatgttatgtttatcacgtgtaataatggcaataaagtaaatcagcc-taaagcactaaattatttctt |
45310338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 135 - 301
Target Start/End: Original strand, 54632206 - 54632378
Alignment:
| Q |
135 |
ctaatgttattgttgcttgtttatgtctctatcatgtctaacttagatattccttccttgtttatcttct------aatgttatgtttatcacgtctaat |
228 |
Q |
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| T |
54632206 |
ctaatgttattgttgcttgcttatgactctatcatgtctaacttaaatattccttctttgtttatattctaattctaatgttatgtttatcacgtgcaat |
54632305 |
T |
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| Q |
229 |
aatggcattagagtaaatcatccttaaagcacttaaatatttcttttgttttcaaacttttctgctgcttacc |
301 |
Q |
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| T |
54632306 |
aatggcattagagtaaatcatccttaaagcacttaaatatttcttttgttttcaaacttttctgctgcttacc |
54632378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 54632118 - 54632182
Alignment:
| Q |
22 |
tagtttctatcatcttttgaatgttgactatcacttttaactgtgcttcagaacttaacttgtta |
86 |
Q |
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| T |
54632118 |
tagtttctatcatcttttgaatgttgactatcacttgtaactgtggttcagaacttaacctgtta |
54632182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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