View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6605_low_4 (Length: 327)
Name: NF6605_low_4
Description: NF6605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6605_low_4 |
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| [»] scaffold0794 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 11468430 - 11468116
Alignment:
| Q |
1 |
tgttctctggatatgtggcattcctctaagaaatggttctcagaggagaaggatcttgcactttatgaaagtgcaatgggggagacattttttaactttc |
100 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11468430 |
tgttctctggatatgtggcactcctctaagaaatggttctcagaggagaaggatcttgcactttatgaaagtgcaatgggggagacattttttaactttc |
11468331 |
T |
|
| Q |
101 |
ttaacaaatattctgaatctgataaacttagtttgtttcaaggggccatggcagctgattcacaaatgtttaagcttgctctcaaggactgtagctatgt |
200 |
Q |
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|||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
11468330 |
ttaacaaagattctgaatctgataaacttggtctgtttcaaggggccatggcagctgattcacaaatgtttaagcttgctctcaaggactgcagccatgt |
11468231 |
T |
|
| Q |
201 |
gtttgagggtttggagtctttggttgatgtggcaggtgggattggagttgtgtcaaagctcattcatgaagaatttccacacgtcaaatgcacagtttta |
300 |
Q |
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||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |
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| T |
11468230 |
gtttgagggtttggaatctttggttgatgtggcaggtgggactggagttgtgtcaaaactcattcatgaagaatttccacacatcaaatgcacagtttta |
11468131 |
T |
|
| Q |
301 |
gatcaaccacaggtt |
315 |
Q |
| |
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||||||||||||||| |
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| T |
11468130 |
gatcaaccacaggtt |
11468116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 11523031 - 11523345
Alignment:
| Q |
1 |
tgttctctggatatgtggcattcctctaagaaatggttctcagaggagaaggatcttgcactttatgaaagtgcaatgggggagacattttttaactttc |
100 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11523031 |
tgttctctggatatgtggcactcctctaagaaatggttctcagaggagaaggatcttgcactttatgaaagtgcaatgggggagacattttttaactttc |
11523130 |
T |
|
| Q |
101 |
ttaacaaatattctgaatctgataaacttagtttgtttcaaggggccatggcagctgattcacaaatgtttaagcttgctctcaaggactgtagctatgt |
200 |
Q |
| |
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|||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
11523131 |
ttaacaaagattctgaatctgataaacttggtctgtttcaaggggccatggcagctgattcacaaatgtttaagcttgctctcaaggactgcagccatgt |
11523230 |
T |
|
| Q |
201 |
gtttgagggtttggagtctttggttgatgtggcaggtgggattggagttgtgtcaaagctcattcatgaagaatttccacacgtcaaatgcacagtttta |
300 |
Q |
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||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |
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| T |
11523231 |
gtttgagggtttggaatctttggttgatgtggcaggtgggactggagttgtgtcaaaactcattcatgaagaatttccacacatcaaatgcacagtttta |
11523330 |
T |
|
| Q |
301 |
gatcaaccacaggtt |
315 |
Q |
| |
|
||||||||||||||| |
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|
| T |
11523331 |
gatcaaccacaggtt |
11523345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 82 - 315
Target Start/End: Complemental strand, 11445359 - 11445126
Alignment:
| Q |
82 |
gagacattttttaactttcttaacaaatattctgaatctgataaacttagtttgtttcaaggggccatggcagctgattcacaaatgtttaagcttgctc |
181 |
Q |
| |
|
|||||||||| ||| |||||||||| || ||||||||||| |||| ||| ||||||||| ||| ||||| |||||||| ||||| || || ||||||| |
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| T |
11445359 |
gagacattttgggactatcttaacaaagatactgaatctgatgaactgagtatgtttcaagaggctatggctgctgattctcaaatcttcaaccttgctc |
11445260 |
T |
|
| Q |
182 |
tcaaggactgtagctatgtgtttgagggtttggagtctttggttgatgtggcaggtgggattggagttgtgtcaaagctcattcatgaagaatttccaca |
281 |
Q |
| |
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| || || || | |||||||||| |||||||||||| | |||||||| | |||||| | |||| | | |||| ||||| ||||||| ||||| | |
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| T |
11445259 |
taaaagagtgcaatcatgtgtttgaaggtttggagtctatagttgatgttggaggtggaagaggaggtttcacaaaactcatccatgaagcttttcctga |
11445160 |
T |
|
| Q |
282 |
cgtcaaatgcacagttttagatcaaccacaggtt |
315 |
Q |
| |
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| ||||||||||||| || ||||||||||||||| |
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| T |
11445159 |
cctcaaatgcacagtatttgatcaaccacaggtt |
11445126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 82 - 315
Target Start/End: Original strand, 11547731 - 11547964
Alignment:
| Q |
82 |
gagacattttttaactttcttaacaaatattctgaatctgataaacttagtttgtttcaaggggccatggcagctgattcacaaatgtttaagcttgctc |
181 |
Q |
| |
|
|||||||||| ||| |||||||||| || ||||||||||| |||| ||| ||||||||| ||| ||||| |||||||| ||||| || || ||||||| |
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| T |
11547731 |
gagacattttgggactatcttaacaaagatactgaatctgatgaactgagtatgtttcaagaggctatggctgctgattctcaaatcttcaaccttgctc |
11547830 |
T |
|
| Q |
182 |
tcaaggactgtagctatgtgtttgagggtttggagtctttggttgatgtggcaggtgggattggagttgtgtcaaagctcattcatgaagaatttccaca |
281 |
Q |
| |
|
| || || || | |||||||||| |||||||||||| | |||||||| | |||||| | |||| | | |||| ||||| ||||||| ||||| | |
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| T |
11547831 |
taaaagagtgcaatcatgtgtttgaaggtttggagtctatagttgatgttggaggtggaagaggaggtttcacaaaactcatccatgaagcttttcctga |
11547930 |
T |
|
| Q |
282 |
cgtcaaatgcacagttttagatcaaccacaggtt |
315 |
Q |
| |
|
| ||||||||||||| || ||||||||||||||| |
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| T |
11547931 |
cctcaaatgcacagtatttgatcaaccacaggtt |
11547964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 82 - 315
Target Start/End: Original strand, 11507500 - 11507733
Alignment:
| Q |
82 |
gagacattttttaactttcttaacaaatattctgaatctgataaacttagtttgtttcaaggggccatggcagctgattcacaaatgtttaagcttgctc |
181 |
Q |
| |
|
|||||||||| ||| |||||||||| || ||||||||||| |||| ||| ||||||||| ||| ||||| |||||||| ||||| || || ||||||| |
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| T |
11507500 |
gagacattttgggactatcttaacaaagatactgaatctgatgaactgagtatgtttcaagaggctatggctgctgattctcaaatcttcaaccttgctc |
11507599 |
T |
|
| Q |
182 |
tcaaggactgtagctatgtgtttgagggtttggagtctttggttgatgtggcaggtgggattggagttgtgtcaaagctcattcatgaagaatttccaca |
281 |
Q |
| |
|
| || || || | |||||||||| |||||| ||||| | |||||||| | |||||| | |||| | | |||| ||||| ||||||| ||||| | |
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| T |
11507600 |
taaaagagtgcaatcatgtgtttgaaggtttgaagtctatagttgatgttggaggtggaagaggaggtttcacaaaactcatccatgaagcttttcctga |
11507699 |
T |
|
| Q |
282 |
cgtcaaatgcacagttttagatcaaccacaggtt |
315 |
Q |
| |
|
| ||||||||||||| || ||||||||||||||| |
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| T |
11507700 |
cctcaaatgcacagtatttgatcaaccacaggtt |
11507733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 97 - 315
Target Start/End: Original strand, 34784321 - 34784539
Alignment:
| Q |
97 |
tttcttaacaaatattctgaatctgataaacttagtttgtttcaaggggccatggcagctgattcacaaatgtttaagcttgctctcaaggactgtagct |
196 |
Q |
| |
|
|||||||||||| |||||||||||| || | ||||||||||||| || ||||| |||||||| |||||||||||||||||| | || | |
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|
| T |
34784321 |
tttcttaacaaagattctgaatctggtactttgagtttgtttcaagatgctatggctgctgattctagaatgtttaagcttgctcttcatgagaacaaga |
34784420 |
T |
|
| Q |
197 |
atgtgtttgagggtttggagtctttggttgatgtggcaggtgggattggagttgtgtcaaagctcattcatgaagaatttccacacgtcaaatgcacagt |
296 |
Q |
| |
|
||||||||||||||||||| ||| | |||||||| || ||||| | || | ||| ||||||| |||||||||| |||||| || |||||||||| || |
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|
| T |
34784421 |
atgtgtttgagggtttggaatctcttgttgatgtcgcgggtggaaccggtgctgtcacaaagcttattcatgaagcatttcctcagatcaaatgcactgt |
34784520 |
T |
|
| Q |
297 |
tttagatcaaccacaggtt |
315 |
Q |
| |
|
||| ||||||||||||||| |
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|
| T |
34784521 |
ttttgatcaaccacaggtt |
34784539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 315
Target Start/End: Original strand, 34776217 - 34776327
Alignment:
| Q |
205 |
gagggtttggagtctttggttgatgtggcaggtgggattggagttgtgtcaaagctcattcatgaagaatttccacacgtcaaatgcacagttttagatc |
304 |
Q |
| |
|
||||||||||||||| | |||||||| | |||||| | ||| | ||| |||| |||||||||||| ||||| ||| | ||||| || ||||| |||| |
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|
| T |
34776217 |
gagggtttggagtctcttgttgatgttggaggtggtactggtggtgttacaaaactcattcatgaaatttttcctcaccttaaatgtactgtttttgatc |
34776316 |
T |
|
| Q |
305 |
aaccacaggtt |
315 |
Q |
| |
|
||||||||||| |
|
|
| T |
34776317 |
aaccacaggtt |
34776327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0794 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0794
Description:
Target: scaffold0794; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 82 - 315
Target Start/End: Original strand, 2157 - 2390
Alignment:
| Q |
82 |
gagacattttttaactttcttaacaaatattctgaatctgataaacttagtttgtttcaaggggccatggcagctgattcacaaatgtttaagcttgctc |
181 |
Q |
| |
|
|||||||||| ||| |||||||||| || ||||||||||| |||| ||| ||||||||| ||| ||||| |||||||| ||||| || || ||||||| |
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|
| T |
2157 |
gagacattttgggactatcttaacaaagatactgaatctgatgaactgagtatgtttcaagaggctatggctgctgattctcaaatcttcaaccttgctc |
2256 |
T |
|
| Q |
182 |
tcaaggactgtagctatgtgtttgagggtttggagtctttggttgatgtggcaggtgggattggagttgtgtcaaagctcattcatgaagaatttccaca |
281 |
Q |
| |
|
| || || || | |||||||||| ||||||| |||| | |||||||| | |||||| | |||| | | |||| ||||| ||||||| ||||| | |
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| T |
2257 |
taaaagagtgcaatcatgtgtttgaaggtttggggtctatagttgatgttggaggtggaagaggaggtttcacaaaactcatccatgaagcttttcctga |
2356 |
T |
|
| Q |
282 |
cgtcaaatgcacagttttagatcaaccacaggtt |
315 |
Q |
| |
|
| ||||||||||||| || ||||||||||||||| |
|
|
| T |
2357 |
cctcaaatgcacagtatttgatcaaccacaggtt |
2390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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