View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6606_high_4 (Length: 268)
Name: NF6606_high_4
Description: NF6606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6606_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 20 - 257
Target Start/End: Original strand, 36288183 - 36288420
Alignment:
| Q |
20 |
atttcattctttaatatttaagcaagtgcttgatcagccacttgaggctgtttactgattgcttttaccatttgtaaacatttcaaaggcaatcatcgaa |
119 |
Q |
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| T |
36288183 |
atttcattctttaatatttaagcaagtgcttgatcagccacttgaggctgtttactgattgcttttaccatttgtaaacatttcaaaggcaatcatcgaa |
36288282 |
T |
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| Q |
120 |
tccaagggatcggtgctggtatcattcctcctgttctggaagttgatctcctagatgaagttattcaggtagctcgcaacaccaatacattagtattcaa |
219 |
Q |
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| T |
36288283 |
tccaagggatcggtgctggtatcattcctcctgttctggaagttgatctcctagatgaagttattcaggtagctcgcaacactaatacattagtattcaa |
36288382 |
T |
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| Q |
220 |
ttatcaatttcgatatagaatatgatattttccttcat |
257 |
Q |
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| T |
36288383 |
ttatcaatttcaatatagaatatgatattttccttcat |
36288420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 69 - 223
Target Start/End: Original strand, 36282888 - 36283042
Alignment:
| Q |
69 |
gtttactgattgcttttaccatttgtaaacatttcaaaggcaatcatcgaatccaagggatcggtgctggtatcattcctcctgttctggaagttgatct |
168 |
Q |
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| T |
36282888 |
gtttactgattgatttttctatttgaacacatttcaaaggcaaacacctaatccaagggatcggtgctggtatcgttccccctatcctggaagttgatct |
36282987 |
T |
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| Q |
169 |
cctagatgaagttattcaggtagctcgcaacaccaatacattagtattcaattat |
223 |
Q |
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| T |
36282988 |
cctagatgaagttattcaggttgctctcaatactaatacattggcattcaattat |
36283042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 99 - 225
Target Start/End: Original strand, 36293702 - 36293828
Alignment:
| Q |
99 |
atttcaaaggcaatcatcgaatccaagggatcggtgctggtatcattcctcctgttctggaagttgatctcctagatgaagttattcaggtagctcgcaa |
198 |
Q |
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||||||||||||| || | | |||||||||||||| |||| || |||| ||||| ||||| |||||||||||||||||||||||||||||||| |||| |
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| T |
36293702 |
atttcaaaggcaaacacctagtccaagggatcggtactggcgtcgttccccctgtcctggatcttgatctcctagatgaagttattcaggtagcttgcaa |
36293801 |
T |
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| Q |
199 |
caccaatacattagtattcaattatca |
225 |
Q |
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| T |
36293802 |
cactaatacactggtattcaattatca |
36293828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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