View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6606_low_1 (Length: 728)
Name: NF6606_low_1
Description: NF6606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6606_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 556; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 556; E-Value: 0
Query Start/End: Original strand, 14 - 573
Target Start/End: Complemental strand, 40783401 - 40782842
Alignment:
| Q |
14 |
tcatcaagctactaaaagcaacacaagtatccgaccgaatcaactcacaactcaacaactcaaatcaaggcctaacaatttttgcaccaacagataatgc |
113 |
Q |
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| T |
40783401 |
tcatcaagctactaaaagcaacacaagtatccgaccgaatcaactcacaactcaacaactcaaatcaaggcctaacaatttttgcaccaacagataatgc |
40783302 |
T |
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| Q |
114 |
cttctcgagtctaaaatcaggaacactaaactcaatcagcacacaaaaccaacttcaacttctacagtttcatattctaccaacactttacacaatatca |
213 |
Q |
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| T |
40783301 |
cttctcgagtctaaaatcaggaacactaaactcaatcagcacacaaaaccaacttcaacttctacagtttcatattctaccaacactttacacaatatca |
40783202 |
T |
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| Q |
214 |
cagtttcaaactgcaagtaaccctctacacacacaagctggaaacagtgatgatggagagtatcctcttaatgttactacttctggaaatcaagttaatg |
313 |
Q |
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| T |
40783201 |
cagtttcaaactgcaagtaaccctctacacacacaagctggaaacagtgatgatggagagtatcctcttaatgttactacttctggaaatcaagttaatg |
40783102 |
T |
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| Q |
314 |
taacaactggtgtgattgatacaactgtttctaatactatttatagtgataatcagcttgcagtgtatcaggttgatcaagtgcttcttcctatggcact |
413 |
Q |
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| T |
40783101 |
taacaactggtgtgattgatacaactgtttctaatactatttatagtgataatcagcttgcagtgtatcaggttgatcaagtgcttcttcctatggcact |
40783002 |
T |
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| Q |
414 |
ttttggacaaggtccaaccgctgcgcctgcggaggctcctgcaccgactaagccggagaaaagtgttcgggcttctgatgctccaaaagggtcttcagat |
513 |
Q |
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| T |
40783001 |
ttttggacaaggtccaaccgctgcgcctgcggaggctcctgcaccgactaagccggagaaaagtgttcgggcttctgatgctccaaaagggtcttcggat |
40782902 |
T |
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| Q |
514 |
agtccggctgatgattcgagtgctgttggtttgaatggctacatagttaatggtgctaca |
573 |
Q |
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| T |
40782901 |
agtccggctgatgattcgagtgctgttggtttgaatggctacatagttaatggtgctaca |
40782842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 686 - 721
Target Start/End: Complemental strand, 40782729 - 40782694
Alignment:
| Q |
686 |
ccttgagccagtttgagttgattgatgatgatgatg |
721 |
Q |
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| T |
40782729 |
ccttgagccagtttgagttgattgatgatgatgatg |
40782694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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