View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6606_low_11 (Length: 219)
Name: NF6606_low_11
Description: NF6606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6606_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 19 - 120
Target Start/End: Original strand, 51940181 - 51940278
Alignment:
| Q |
19 |
ggcaggaatcacgaaaaaacacaagtaacctgctcgagtgcggcttgcttagcaaaaaatgaaaggaaagaagtagggttcgcgagcaaagtaactaaaa |
118 |
Q |
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| T |
51940181 |
ggcaggaatcacgaaaaaacacaagtaacctgctcgagtgcggcttgcttagcaaaaaatgaaaggaaagaa----ggttcgcgagcaaagtaactaaaa |
51940276 |
T |
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Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 115 - 199
Target Start/End: Original strand, 51946430 - 51946514
Alignment:
| Q |
115 |
aaaaaatacctacgataagcaggtaaatatccgcattgttggctttgcacctaggtttgaataattacctgcaaacggtatggac |
199 |
Q |
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| T |
51946430 |
aaaaaatacctacgataagcacgtaaatatccgcattattggctttgcacctaagtttgaataattacctgcaaacggtatggac |
51946514 |
T |
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