View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6606_low_2 (Length: 527)
Name: NF6606_low_2
Description: NF6606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6606_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 426; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 20 - 514
Target Start/End: Complemental strand, 21433505 - 21433003
Alignment:
| Q |
20 |
ctttgcctatgctccaatacaaagagtctacctctggcgatatctattgtttcatcatatataaaaagccataaaaatccagaccatcaagaaagagtcg |
119 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21433505 |
ctttgcctatgctccaatacgaagagtctacctctggcgatatctattgtttcatcatatataaaaagccataaaaatccagaccatcaagaaagagtcg |
21433406 |
T |
|
| Q |
120 |
taaggaaattcactcatgaggatgatgctagttttaggagatgaatctactctaataaatgagtttgaaataccctaattctacttctatgcgatgatgt |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
21433405 |
taaggaaattcactcatgaggatgatgctagttttaggagatgaatctactctaataaatgagtttgaaataccctaattctacttctatgtgatgatgt |
21433306 |
T |
|
| Q |
220 |
gtaggttggtacttgcaattgcagaataatacaatgatatctgtcttttagcaacaaaagttcgtgaacaaacacagctgtaagattggtacttatgatt |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21433305 |
gtaggttggtacttgcaattgcagaataatacaatgatatctgtcttttagcaacaaaagttcgtgaacaaacacagctgtaagattggtacttatgatt |
21433206 |
T |
|
| Q |
320 |
ttcaagatggaatcaaagaggaaaaatgcataaagtctgctgcaacctttccaaaagcatttaacaaacacaactgtaagattagatggaatataagttc |
419 |
Q |
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||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| ||| |
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| T |
21433205 |
ttcaagatggaatcaaagacgaaaaatgcataaagcctgctgcaacctttcctaaagcatttaacaaacactactgtaagattagatggaatataacttc |
21433106 |
T |
|
| Q |
420 |
ttcgacccactttttcaaaaggtgt--------agaatgtcagtataggatgatctaaagacaacacagtagaactagcacacattatgctgaatacaca |
511 |
Q |
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|||||||||||||| |||||||||| || || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
21433105 |
ttcgacccacttttccaaaaggtgtttaatgtcagcatttcagtataagatgatctaaagacaacacagtagaactagcacacattatgctgaatacaga |
21433006 |
T |
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| Q |
512 |
ggt |
514 |
Q |
| |
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||| |
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| T |
21433005 |
ggt |
21433003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 75 - 207
Target Start/End: Complemental strand, 27152300 - 27152167
Alignment:
| Q |
75 |
catatataaaaagccataaaaatccagaccatcaagaaagagtcgtaaggaaattcactcatgaggatgatgctagttttaggagatgaatctactcta- |
173 |
Q |
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|||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||| |
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| T |
27152300 |
catatataaaaagccataaaaacccagacaatcaagaaagagttgtaaggaaattcactcatgaggatggtgctatttttaggagatgaatttactctat |
27152201 |
T |
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| Q |
174 |
ataaatgagtttgaaataccctaattctacttct |
207 |
Q |
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||||||||||||||||| |||||||||||||||| |
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| T |
27152200 |
ataaatgagtttgaaatgccctaattctacttct |
27152167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 204 - 514
Target Start/End: Complemental strand, 27152101 - 27151819
Alignment:
| Q |
204 |
ttctatgcgatgatgtgtaggttggtacttgcaattgcagaataatacaatgatatctgtcttttagcaacaaaagttcgtgaacaaacacagctgtaag |
303 |
Q |
| |
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||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||| ||| |
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| T |
27152101 |
ttctatgtgatgatgtgcaggttggtacttgcaattgcagaataatacaatgatatctgtcttttagtaacaaaagttcatgaa------cagatgt--- |
27152011 |
T |
|
| Q |
304 |
attggtacttatgattttcaagatggaatcaaagag--gaaaaatgcataaagtctgctgcaacctttccaaaagcatttaacaaacacaactgtaagat |
401 |
Q |
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| | | | ||||||| || |||||||||| | ||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||| |
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| T |
27152010 |
--tttttcagaaaattttcataatagaatcaaagacatgcaaaatgcataaagcatgttgcaacctttccaaaagcatttaacaaacgcaactgtaagat |
27151913 |
T |
|
| Q |
402 |
tagatggaatataagttcttcgacccactttttcaaaaggtgtagaatgtcagtataggatgatctaaagacaacacagtagaactagcacacattatgc |
501 |
Q |
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|| |||||||||||||||||||| ||| || |||||| ||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
27151912 |
tatatggaatataagttcttcga--------ttc-----------catttcagtaaaggattatctaaagacaacacagtagaactagcacacattatgc |
27151832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 204 - 279
Target Start/End: Complemental strand, 26989215 - 26989140
Alignment:
| Q |
204 |
ttctatgcgatgatgtgtaggttggtacttgcaattgcagaataatacaatgatatctgtcttttagcaacaaaag |
279 |
Q |
| |
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||||||| ||||||||| || |||||||||||| |||||||||||||||||||||||||||||||||||| |||| |
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| T |
26989215 |
ttctatgtgatgatgtgcagcatggtacttgcaaatgcagaataatacaatgatatctgtcttttagcaaccaaag |
26989140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 360 - 413
Target Start/End: Original strand, 27076185 - 27076238
Alignment:
| Q |
360 |
tgcaacctttccaaaagcatttaacaaacacaactgtaagattagatggaatat |
413 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27076185 |
tgcaagctttccaaaagcatttaacaaacacaactgtaagattagatggaatat |
27076238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 204 - 274
Target Start/End: Original strand, 27076060 - 27076130
Alignment:
| Q |
204 |
ttctatgcgatgatgtgtaggttggtacttgcaattgcagaataatacaatgatatctgtcttttagcaac |
274 |
Q |
| |
|
||||||| ||||||||| || |||||| |||||| ||||||||||| ||||||||| |||||||||||||| |
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| T |
27076060 |
ttctatgtgatgatgtgcagcttggtagttgcaaatgcagaataattcaatgatatatgtcttttagcaac |
27076130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 344 - 395
Target Start/End: Complemental strand, 26989087 - 26989036
Alignment:
| Q |
344 |
aatgcataaagtctgctgcaacctttccaaaagcatttaacaaacacaactg |
395 |
Q |
| |
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||||||||||| || ||||| |||||||||||||||||||| ||||||||| |
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| T |
26989087 |
aatgcataaagcttgttgcaaactttccaaaagcatttaacagacacaactg |
26989036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 204 - 279
Target Start/End: Complemental strand, 34691290 - 34691215
Alignment:
| Q |
204 |
ttctatgcgatgatgtgtaggttggtacttgcaattgcagaataatacaatgatatctgtcttttagcaacaaaag |
279 |
Q |
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||||||| ||||||||| || |||||||||||| |||||||||||||||||||||||||||||||||||| |||| |
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| T |
34691290 |
ttctatgtgatgatgtgcagcatggtacttgcaaatgcagaataatacaatgatatctgtcttttagcaaccaaag |
34691215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 274
Target Start/End: Original strand, 50173321 - 50173367
Alignment:
| Q |
226 |
tggtacttgcaattgcagaataatacaatgatatctgtcttttagcaac |
274 |
Q |
| |
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|||||||||||||||||||||| |||| ||||||||||||||| |||| |
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| T |
50173321 |
tggtacttgcaattgcagaata--acaacgatatctgtcttttaacaac |
50173367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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